Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1761 and SMa1765 are separated by 378 nucleotides SMa1765 and SMa1766 are separated by 27 nucleotides
SMa1761: SMa1761 - aminotransferase, at 1,001,791 to 1,003,107
SMa1761
SMa1765: SMa1765 - hypothetical protein, at 1,003,486 to 1,003,971
SMa1765
SMa1766: SMa1766 - hypothetical protein, at 1,003,999 to 1,004,250
SMa1766
Position (kb)
1003
1004 Strain fitness (log2 ratio)
-1
0
1 at 1002.548 kb on + strand, within SMa1761 at 1002.822 kb on + strand, within SMa1761 at 1002.826 kb on - strand, within SMa1761 at 1002.826 kb on - strand, within SMa1761 at 1002.826 kb on - strand, within SMa1761 at 1002.927 kb on - strand, within SMa1761 at 1003.117 kb on + strand at 1003.117 kb on + strand at 1003.117 kb on + strand at 1003.118 kb on - strand at 1003.221 kb on - strand at 1003.232 kb on - strand at 1003.395 kb on + strand at 1003.395 kb on + strand at 1003.488 kb on - strand at 1003.650 kb on + strand, within SMa1765 at 1003.651 kb on - strand, within SMa1765 at 1003.930 kb on + strand at 1004.026 kb on + strand, within SMa1766 at 1004.027 kb on - strand, within SMa1766 at 1004.090 kb on + strand, within SMa1766 at 1004.090 kb on + strand, within SMa1766 at 1004.091 kb on - strand, within SMa1766 at 1004.091 kb on - strand, within SMa1766 at 1004.091 kb on - strand, within SMa1766 at 1004.091 kb on - strand, within SMa1766 at 1004.091 kb on - strand, within SMa1766 at 1004.091 kb on - strand, within SMa1766 at 1004.230 kb on - strand at 1004.245 kb on - strand at 1004.269 kb on + strand at 1004.270 kb on - strand at 1004.274 kb on - strand at 1004.274 kb on - strand at 1004.274 kb on - strand at 1004.285 kb on + strand at 1004.285 kb on + strand at 1004.285 kb on + strand at 1004.286 kb on - strand at 1004.353 kb on + strand at 1004.354 kb on - strand at 1004.354 kb on - strand at 1004.469 kb on - strand at 1004.497 kb on + strand at 1004.616 kb on + strand at 1004.616 kb on + strand at 1004.648 kb on + strand at 1004.805 kb on + strand at 1004.826 kb on + strand at 1004.826 kb on + strand at 1004.914 kb on + strand at 1004.923 kb on + strand at 1004.962 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 1,002,548 + SMa1761 0.57 +0.3 1,002,822 + SMa1761 0.78 -0.1 1,002,826 - SMa1761 0.79 -0.3 1,002,826 - SMa1761 0.79 -0.2 1,002,826 - SMa1761 0.79 -1.3 1,002,927 - SMa1761 0.86 -0.2 1,003,117 + +0.1 1,003,117 + -0.5 1,003,117 + -0.5 1,003,118 - +0.3 1,003,221 - +0.1 1,003,232 - -0.8 1,003,395 + -0.6 1,003,395 + +0.7 1,003,488 - -0.5 1,003,650 + SMa1765 0.34 +0.3 1,003,651 - SMa1765 0.34 +0.7 1,003,930 + -0.2 1,004,026 + SMa1766 0.11 -0.1 1,004,027 - SMa1766 0.11 +0.8 1,004,090 + SMa1766 0.36 +0.6 1,004,090 + SMa1766 0.36 +1.1 1,004,091 - SMa1766 0.37 -0.0 1,004,091 - SMa1766 0.37 -0.1 1,004,091 - SMa1766 0.37 -0.2 1,004,091 - SMa1766 0.37 +0.3 1,004,091 - SMa1766 0.37 -1.6 1,004,091 - SMa1766 0.37 -0.6 1,004,230 - -0.7 1,004,245 - -0.1 1,004,269 + -0.1 1,004,270 - -0.4 1,004,274 - -0.2 1,004,274 - -0.8 1,004,274 - -0.3 1,004,285 + +0.4 1,004,285 + +0.3 1,004,285 + +1.0 1,004,286 - -1.1 1,004,353 + +0.3 1,004,354 - +0.6 1,004,354 - -1.0 1,004,469 - -0.6 1,004,497 + -0.4 1,004,616 + +1.0 1,004,616 + -0.0 1,004,648 + -0.3 1,004,805 + +0.1 1,004,826 + -0.2 1,004,826 + +0.1 1,004,914 + -0.9 1,004,923 + +0.1 1,004,962 + -0.1
Or see this region's nucleotide sequence