Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1641 and SMa1643 overlap by 4 nucleotides SMa1643 and SMa1644 are separated by 97 nucleotides SMa1644 and SMa5010 are separated by 177 nucleotides
SMa1641: SMa1641 - NreB protein, at 914,013 to 915,335
SMa1641
SMa1643: SMa1643 - hypothetical protein, at 915,332 to 915,670
SMa1643
SMa1644: SMa1644 - ABC transporter permease, at 915,768 to 916,487
SMa1644
SMa5010: SMa5010 - hypothetical protein, at 916,665 to 917,003
SMa5010
Position (kb) 915
916 Strain fitness (log2 ratio) -1
0
1
2 at 914.412 kb on - strand, within SMa1641 at 914.442 kb on + strand, within SMa1641 at 914.443 kb on - strand, within SMa1641 at 914.443 kb on - strand, within SMa1641 at 914.608 kb on - strand, within SMa1641 at 914.608 kb on - strand, within SMa1641 at 914.638 kb on - strand, within SMa1641 at 914.638 kb on - strand, within SMa1641 at 914.669 kb on - strand, within SMa1641 at 914.908 kb on + strand, within SMa1641 at 914.966 kb on + strand, within SMa1641 at 915.076 kb on - strand, within SMa1641 at 915.565 kb on + strand, within SMa1643 at 915.587 kb on - strand, within SMa1643 at 915.726 kb on - strand at 915.804 kb on + strand at 915.805 kb on - strand at 915.825 kb on - strand at 915.825 kb on - strand at 915.945 kb on + strand, within SMa1644 at 915.945 kb on + strand, within SMa1644 at 915.946 kb on - strand, within SMa1644 at 916.034 kb on - strand, within SMa1644 at 916.064 kb on + strand, within SMa1644 at 916.065 kb on - strand, within SMa1644 at 916.065 kb on - strand, within SMa1644 at 916.451 kb on - strand at 916.453 kb on + strand at 916.454 kb on - strand at 916.454 kb on - strand at 916.571 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 914,412 - SMa1641 0.30 +0.5 914,442 + SMa1641 0.32 -0.3 914,443 - SMa1641 0.33 +0.4 914,443 - SMa1641 0.33 +0.3 914,608 - SMa1641 0.45 +0.9 914,608 - SMa1641 0.45 +0.1 914,638 - SMa1641 0.47 -0.4 914,638 - SMa1641 0.47 -0.0 914,669 - SMa1641 0.50 -0.5 914,908 + SMa1641 0.68 -1.3 914,966 + SMa1641 0.72 +0.3 915,076 - SMa1641 0.80 -0.1 915,565 + SMa1643 0.69 +0.4 915,587 - SMa1643 0.75 +0.4 915,726 - -0.2 915,804 + +0.5 915,805 - +0.3 915,825 - -0.1 915,825 - +0.7 915,945 + SMa1644 0.25 -0.5 915,945 + SMa1644 0.25 +1.1 915,946 - SMa1644 0.25 +0.1 916,034 - SMa1644 0.37 +0.3 916,064 + SMa1644 0.41 +0.2 916,065 - SMa1644 0.41 -0.5 916,065 - SMa1644 0.41 -0.6 916,451 - +2.3 916,453 + -0.0 916,454 - +0.1 916,454 - -0.3 916,571 - +0.1
Or see this region's nucleotide sequence