Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1381 and SMa5031 overlap by 14 nucleotides SMa5031 and SMa1386 overlap by 4 nucleotides SMa1386 and SMa1387 are separated by 351 nucleotides
SMa1381: SMa1381 - oxidase, at 761,267 to 762,625
SMa1381
SMa5031: SMa5031 - hypothetical protein, at 762,612 to 762,869
SMa5031
SMa1386: SMa1386 - oxidoreductase, at 762,866 to 763,846
SMa1386
SMa1387: SMa1387 - LysR family transcriptional regulator, at 764,198 to 765,112
SMa1387
Position (kb) 762
763
764 Strain fitness (log2 ratio) -1
0
1 at 761.927 kb on - strand, within SMa1381 at 762.308 kb on + strand, within SMa1381 at 762.308 kb on + strand, within SMa1381 at 762.443 kb on - strand, within SMa1381 at 762.443 kb on - strand, within SMa1381 at 762.655 kb on + strand, within SMa5031 at 762.736 kb on + strand, within SMa5031 at 763.064 kb on + strand, within SMa1386 at 763.251 kb on + strand, within SMa1386 at 763.251 kb on + strand, within SMa1386 at 763.296 kb on + strand, within SMa1386 at 763.296 kb on + strand, within SMa1386 at 763.297 kb on - strand, within SMa1386 at 763.400 kb on + strand, within SMa1386 at 763.401 kb on - strand, within SMa1386 at 763.402 kb on + strand, within SMa1386 at 763.403 kb on - strand, within SMa1386 at 763.571 kb on + strand, within SMa1386 at 763.572 kb on - strand, within SMa1386 at 763.572 kb on - strand, within SMa1386 at 763.572 kb on - strand, within SMa1386 at 763.572 kb on - strand, within SMa1386 at 763.578 kb on + strand, within SMa1386 at 763.661 kb on - strand, within SMa1386 at 764.181 kb on + strand at 764.261 kb on + strand at 764.262 kb on - strand at 764.285 kb on + strand at 764.285 kb on + strand at 764.286 kb on - strand at 764.655 kb on + strand, within SMa1387 at 764.655 kb on + strand, within SMa1387 at 764.655 kb on + strand, within SMa1387 at 764.656 kb on - strand, within SMa1387 at 764.656 kb on - strand, within SMa1387 at 764.656 kb on - strand, within SMa1387 at 764.715 kb on - strand, within SMa1387 at 764.732 kb on + strand, within SMa1387 at 764.770 kb on + strand, within SMa1387 at 764.770 kb on + strand, within SMa1387 at 764.771 kb on - strand, within SMa1387 at 764.823 kb on + strand, within SMa1387 at 764.823 kb on + strand, within SMa1387 at 764.823 kb on + strand, within SMa1387 at 764.823 kb on + strand, within SMa1387 at 764.824 kb on - strand, within SMa1387 at 764.824 kb on - strand, within SMa1387 at 764.824 kb on - strand, within SMa1387 at 764.824 kb on - strand, within SMa1387 at 764.824 kb on - strand, within SMa1387 at 764.824 kb on - strand, within SMa1387 at 764.826 kb on + strand, within SMa1387 at 764.827 kb on - strand, within SMa1387
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 761,927 - SMa1381 0.49 +0.2 762,308 + SMa1381 0.77 -0.6 762,308 + SMa1381 0.77 +0.3 762,443 - SMa1381 0.87 -0.2 762,443 - SMa1381 0.87 +0.2 762,655 + SMa5031 0.17 -0.4 762,736 + SMa5031 0.48 -0.7 763,064 + SMa1386 0.20 -0.2 763,251 + SMa1386 0.39 +0.4 763,251 + SMa1386 0.39 -1.7 763,296 + SMa1386 0.44 +0.0 763,296 + SMa1386 0.44 +0.1 763,297 - SMa1386 0.44 +0.1 763,400 + SMa1386 0.54 -0.8 763,401 - SMa1386 0.55 +0.1 763,402 + SMa1386 0.55 -1.3 763,403 - SMa1386 0.55 -0.9 763,571 + SMa1386 0.72 +0.0 763,572 - SMa1386 0.72 +0.2 763,572 - SMa1386 0.72 -1.0 763,572 - SMa1386 0.72 +0.0 763,572 - SMa1386 0.72 -0.9 763,578 + SMa1386 0.73 -0.1 763,661 - SMa1386 0.81 -0.2 764,181 + -0.3 764,261 + -0.1 764,262 - -0.0 764,285 + -0.2 764,285 + +0.1 764,286 - -0.1 764,655 + SMa1387 0.50 +0.3 764,655 + SMa1387 0.50 +0.2 764,655 + SMa1387 0.50 -1.0 764,656 - SMa1387 0.50 -1.1 764,656 - SMa1387 0.50 +1.1 764,656 - SMa1387 0.50 -0.2 764,715 - SMa1387 0.57 +0.3 764,732 + SMa1387 0.58 -0.6 764,770 + SMa1387 0.63 +1.0 764,770 + SMa1387 0.63 -0.1 764,771 - SMa1387 0.63 -0.4 764,823 + SMa1387 0.68 +0.1 764,823 + SMa1387 0.68 -0.2 764,823 + SMa1387 0.68 -0.6 764,823 + SMa1387 0.68 +0.0 764,824 - SMa1387 0.68 -0.1 764,824 - SMa1387 0.68 +0.8 764,824 - SMa1387 0.68 +0.2 764,824 - SMa1387 0.68 +1.3 764,824 - SMa1387 0.68 +1.2 764,824 - SMa1387 0.68 -0.3 764,826 + SMa1387 0.69 -0.0 764,827 - SMa1387 0.69 -0.3
Or see this region's nucleotide sequence