Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1289 and SMa1291 overlap by 10 nucleotides SMa1291 and SMa1292 are separated by 6 nucleotides SMa1292 and SMa1294 overlap by 4 nucleotides SMa1294 and SMa1296 are separated by 495 nucleotides
SMa1289: SMa1289 - hypothetical protein, at 703,500 to 704,006
SMa1289
SMa1291: SMa1291 - Protease, at 703,997 to 704,974
SMa1291
SMa1292: SMa1292 - Peptidase, at 704,981 to 705,916
SMa1292
SMa1294: SMa1294 - hypothetical protein, at 705,913 to 706,359
SMa1294
SMa1296: SMa1296 - alcohol dehydrogenase, at 706,855 to 707,877
SMa1296
Position (kb) 704
705
706 Strain fitness (log2 ratio) -1
0
1 at 704.069 kb on + strand at 704.147 kb on - strand, within SMa1291 at 704.154 kb on - strand, within SMa1291 at 704.229 kb on - strand, within SMa1291 at 704.293 kb on + strand, within SMa1291 at 704.294 kb on - strand, within SMa1291 at 704.316 kb on - strand, within SMa1291 at 704.537 kb on + strand, within SMa1291 at 704.537 kb on + strand, within SMa1291 at 704.549 kb on - strand, within SMa1291 at 704.640 kb on - strand, within SMa1291 at 704.640 kb on - strand, within SMa1291 at 704.834 kb on + strand, within SMa1291 at 704.834 kb on + strand, within SMa1291 at 704.835 kb on - strand, within SMa1291 at 704.835 kb on - strand, within SMa1291 at 704.897 kb on - strand at 704.972 kb on + strand at 705.143 kb on + strand, within SMa1292 at 705.144 kb on - strand, within SMa1292 at 705.144 kb on - strand, within SMa1292 at 705.240 kb on + strand, within SMa1292 at 705.240 kb on + strand, within SMa1292 at 705.240 kb on + strand, within SMa1292 at 705.241 kb on - strand, within SMa1292 at 705.396 kb on + strand, within SMa1292 at 705.397 kb on - strand, within SMa1292 at 705.818 kb on + strand, within SMa1292 at 706.357 kb on + strand at 706.357 kb on + strand at 706.373 kb on + strand at 706.373 kb on + strand at 706.373 kb on + strand at 706.374 kb on - strand at 706.692 kb on + strand at 706.692 kb on + strand at 706.693 kb on - strand at 706.696 kb on + strand at 706.696 kb on + strand at 706.696 kb on + strand at 706.697 kb on - strand at 706.716 kb on + strand at 706.716 kb on + strand at 706.717 kb on - strand at 706.759 kb on + strand at 706.759 kb on + strand at 706.759 kb on + strand at 706.789 kb on + strand at 706.807 kb on + strand at 706.879 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 704,069 + -0.6 704,147 - SMa1291 0.15 -0.7 704,154 - SMa1291 0.16 +0.3 704,229 - SMa1291 0.24 +1.0 704,293 + SMa1291 0.30 -0.2 704,294 - SMa1291 0.30 -0.2 704,316 - SMa1291 0.33 -0.3 704,537 + SMa1291 0.55 -0.3 704,537 + SMa1291 0.55 +0.1 704,549 - SMa1291 0.56 -1.4 704,640 - SMa1291 0.66 -0.1 704,640 - SMa1291 0.66 -0.5 704,834 + SMa1291 0.86 -0.3 704,834 + SMa1291 0.86 +0.3 704,835 - SMa1291 0.86 +0.2 704,835 - SMa1291 0.86 +0.1 704,897 - -0.5 704,972 + +0.3 705,143 + SMa1292 0.17 +0.3 705,144 - SMa1292 0.17 +0.2 705,144 - SMa1292 0.17 +1.2 705,240 + SMa1292 0.28 +1.5 705,240 + SMa1292 0.28 +1.6 705,240 + SMa1292 0.28 -0.0 705,241 - SMa1292 0.28 +0.1 705,396 + SMa1292 0.44 +0.1 705,397 - SMa1292 0.44 -0.9 705,818 + SMa1292 0.89 +0.1 706,357 + -0.3 706,357 + +1.4 706,373 + +0.1 706,373 + +0.8 706,373 + +0.3 706,374 - -0.4 706,692 + +0.4 706,692 + -0.3 706,693 - -0.4 706,696 + +0.2 706,696 + -0.3 706,696 + -0.4 706,697 - +0.8 706,716 + +0.5 706,716 + -0.8 706,717 - -0.9 706,759 + +0.2 706,759 + +0.1 706,759 + -1.2 706,789 + -1.0 706,807 + -0.1 706,879 - +0.8
Or see this region's nucleotide sequence