Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1169 and SMa1170 are separated by 61 nucleotides SMa1170 and SMa1171 are separated by 2 nucleotides SMa1171 and SMa1172 overlap by 4 nucleotides SMa1172 and SMa1174 overlap by 80 nucleotides SMa1174 and SMa1176 are separated by 561 nucleotides
SMa1169: SMa1169 - hypothetical protein, at 641,662 to 642,003
SMa1169
SMa1170: SMa1170 - hypothetical protein, at 642,065 to 642,382
SMa1170
SMa1171: SMa1171 - hypothetical protein, at 642,385 to 642,645
SMa1171
SMa1172: SMa1172 - hypothetical protein, at 642,642 to 642,890
SMa1172
SMa1174: SMa1174 - hypothetical protein, at 642,811 to 643,314
SMa1174
SMa1176: SMa1176 - hypothetical protein, at 643,876 to 644,394
SMa1176
Position (kb) 642
643
644 Strain fitness (log2 ratio) -2
-1
0
1
2 at 641.875 kb on + strand, within SMa1169 at 641.875 kb on + strand, within SMa1169 at 641.875 kb on + strand, within SMa1169 at 641.875 kb on + strand, within SMa1169 at 641.875 kb on + strand, within SMa1169 at 641.928 kb on - strand, within SMa1169 at 642.008 kb on + strand at 642.050 kb on + strand at 642.075 kb on + strand at 642.075 kb on + strand at 642.181 kb on + strand, within SMa1170 at 642.226 kb on + strand, within SMa1170 at 642.327 kb on + strand, within SMa1170 at 642.365 kb on + strand at 642.369 kb on + strand at 642.369 kb on + strand at 642.370 kb on - strand at 642.370 kb on - strand at 642.381 kb on - strand at 642.381 kb on - strand at 642.386 kb on + strand at 642.464 kb on + strand, within SMa1171 at 642.465 kb on - strand, within SMa1171 at 642.465 kb on - strand, within SMa1171 at 642.471 kb on - strand, within SMa1171 at 642.914 kb on - strand, within SMa1174 at 643.192 kb on - strand, within SMa1174 at 643.259 kb on - strand, within SMa1174 at 643.372 kb on + strand at 643.373 kb on - strand at 643.373 kb on - strand at 643.433 kb on + strand at 643.433 kb on + strand at 643.433 kb on + strand at 643.433 kb on + strand at 643.433 kb on + strand at 643.433 kb on + strand at 643.433 kb on + strand at 643.433 kb on + strand at 643.434 kb on - strand at 643.434 kb on - strand at 643.434 kb on - strand at 643.434 kb on - strand at 643.434 kb on - strand at 643.488 kb on + strand at 643.488 kb on + strand at 643.600 kb on - strand at 643.650 kb on + strand at 643.650 kb on + strand at 643.698 kb on + strand at 643.725 kb on - strand at 643.994 kb on - strand, within SMa1176 at 644.183 kb on + strand, within SMa1176 at 644.256 kb on + strand, within SMa1176
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 641,875 + SMa1169 0.62 -0.3 641,875 + SMa1169 0.62 -0.5 641,875 + SMa1169 0.62 -0.0 641,875 + SMa1169 0.62 -0.2 641,875 + SMa1169 0.62 +0.7 641,928 - SMa1169 0.78 +1.3 642,008 + +0.5 642,050 + -1.0 642,075 + -0.3 642,075 + +0.4 642,181 + SMa1170 0.36 +0.1 642,226 + SMa1170 0.51 +0.6 642,327 + SMa1170 0.82 +0.3 642,365 + +0.6 642,369 + +0.9 642,369 + +0.4 642,370 - -0.1 642,370 - +0.5 642,381 - +0.4 642,381 - +0.6 642,386 + -0.3 642,464 + SMa1171 0.30 -0.5 642,465 - SMa1171 0.31 -1.1 642,465 - SMa1171 0.31 +1.1 642,471 - SMa1171 0.33 +0.2 642,914 - SMa1174 0.20 +1.0 643,192 - SMa1174 0.76 -0.8 643,259 - SMa1174 0.89 +0.6 643,372 + +1.1 643,373 - +0.2 643,373 - -0.9 643,433 + -0.8 643,433 + +0.1 643,433 + -0.1 643,433 + -0.2 643,433 + +0.6 643,433 + +0.2 643,433 + +2.4 643,433 + +0.2 643,434 - +0.1 643,434 - -0.3 643,434 - +0.3 643,434 - +0.0 643,434 - -2.3 643,488 + +0.4 643,488 + +0.3 643,600 - -0.3 643,650 + -0.5 643,650 + -0.1 643,698 + -0.8 643,725 - -0.4 643,994 - SMa1176 0.23 +0.0 644,183 + SMa1176 0.59 +0.7 644,256 + SMa1176 0.73 +0.1
Or see this region's nucleotide sequence