Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0815 and SMa0816 are separated by 219 nucleotides SMa0816 and SMa0817 are separated by 12 nucleotides
SMa0815: SMa0815 - Fis family transcriptional regulator, at 445,895 to 447,520
SMa0815
SMa0816: SMa0816 - FixX ferredoxin-like protein, at 447,740 to 448,036
SMa0816
SMa0817: SMa0817 - oxidoreductase FixC, at 448,049 to 449,356
SMa0817
Position (kb) 447
448
449 Strain fitness (log2 ratio) -2
-1
0
1 at 446.802 kb on - strand, within SMa0815 at 446.842 kb on + strand, within SMa0815 at 446.888 kb on + strand, within SMa0815 at 446.888 kb on + strand, within SMa0815 at 446.888 kb on + strand, within SMa0815 at 446.909 kb on - strand, within SMa0815 at 446.984 kb on - strand, within SMa0815 at 447.076 kb on + strand, within SMa0815 at 447.090 kb on - strand, within SMa0815 at 447.109 kb on - strand, within SMa0815 at 447.109 kb on - strand, within SMa0815 at 447.421 kb on + strand at 447.422 kb on - strand at 447.479 kb on + strand at 447.480 kb on - strand at 447.536 kb on + strand at 447.551 kb on - strand at 447.551 kb on - strand at 447.584 kb on + strand at 447.584 kb on + strand at 447.607 kb on + strand at 447.611 kb on - strand at 447.658 kb on + strand at 447.731 kb on + strand at 447.731 kb on + strand at 447.732 kb on - strand at 447.732 kb on - strand at 447.781 kb on - strand, within SMa0816 at 447.926 kb on + strand, within SMa0816 at 447.955 kb on + strand, within SMa0816 at 447.956 kb on - strand, within SMa0816 at 447.956 kb on - strand, within SMa0816 at 448.151 kb on - strand at 448.151 kb on - strand at 448.193 kb on + strand, within SMa0817 at 448.207 kb on - strand, within SMa0817 at 448.234 kb on + strand, within SMa0817 at 448.235 kb on - strand, within SMa0817 at 448.429 kb on + strand, within SMa0817 at 448.430 kb on - strand, within SMa0817 at 448.430 kb on - strand, within SMa0817 at 448.430 kb on - strand, within SMa0817 at 448.430 kb on - strand, within SMa0817 at 448.521 kb on + strand, within SMa0817 at 448.530 kb on - strand, within SMa0817 at 448.574 kb on - strand, within SMa0817 at 448.593 kb on + strand, within SMa0817 at 448.593 kb on + strand, within SMa0817 at 448.668 kb on + strand, within SMa0817 at 448.668 kb on + strand, within SMa0817 at 448.833 kb on - strand, within SMa0817 at 448.964 kb on - strand, within SMa0817 at 449.016 kb on - strand, within SMa0817
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 446,802 - SMa0815 0.56 +0.1 446,842 + SMa0815 0.58 +0.7 446,888 + SMa0815 0.61 -0.4 446,888 + SMa0815 0.61 -0.3 446,888 + SMa0815 0.61 -1.3 446,909 - SMa0815 0.62 +0.1 446,984 - SMa0815 0.67 -0.1 447,076 + SMa0815 0.73 -0.1 447,090 - SMa0815 0.73 -0.4 447,109 - SMa0815 0.75 -0.2 447,109 - SMa0815 0.75 +0.3 447,421 + -0.0 447,422 - -0.1 447,479 + -0.2 447,480 - -0.3 447,536 + +0.5 447,551 - +0.1 447,551 - -0.8 447,584 + +0.1 447,584 + -0.0 447,607 + -0.7 447,611 - +0.3 447,658 + -1.0 447,731 + +0.0 447,731 + -1.1 447,732 - -0.2 447,732 - -0.6 447,781 - SMa0816 0.14 +0.6 447,926 + SMa0816 0.63 -0.0 447,955 + SMa0816 0.72 +0.1 447,956 - SMa0816 0.73 -0.0 447,956 - SMa0816 0.73 +1.0 448,151 - -0.8 448,151 - -0.8 448,193 + SMa0817 0.11 +0.6 448,207 - SMa0817 0.12 -0.3 448,234 + SMa0817 0.14 -0.1 448,235 - SMa0817 0.14 -0.1 448,429 + SMa0817 0.29 -0.1 448,430 - SMa0817 0.29 -0.1 448,430 - SMa0817 0.29 -0.6 448,430 - SMa0817 0.29 +0.0 448,430 - SMa0817 0.29 -0.7 448,521 + SMa0817 0.36 -2.4 448,530 - SMa0817 0.37 -0.6 448,574 - SMa0817 0.40 -0.3 448,593 + SMa0817 0.42 -0.5 448,593 + SMa0817 0.42 +1.3 448,668 + SMa0817 0.47 +0.6 448,668 + SMa0817 0.47 -0.3 448,833 - SMa0817 0.60 -0.1 448,964 - SMa0817 0.70 +0.1 449,016 - SMa0817 0.74 +1.0
Or see this region's nucleotide sequence