Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0545 and SMa0548 overlap by 1 nucleotides SMa0548 and SMa0551 are separated by 339 nucleotides SMa0551 and SMa0552 are separated by 92 nucleotides SMa0552 and SMa0554 overlap by 23 nucleotides
SMa0545: SMa0545 - hypothetical protein, at 291,198 to 291,638
SMa0545
SMa0548: SMa0548 - hypothetical protein, at 291,638 to 291,877
SMa0548
SMa0551: SMa0551 - N-ethylammeline chlorohydrolase, at 292,217 to 293,509
SMa0551
SMa0552: SMa0552 - cyclic amidohydrolase, at 293,602 to 294,093
SMa0552
SMa0554: SMa0554 - hypothetical protein, at 294,071 to 294,868
SMa0554
Position (kb) 292
293
294 Strain fitness (log2 ratio) -2
-1
0
1 at 291.231 kb on + strand at 291.290 kb on + strand, within SMa0545 at 291.290 kb on + strand, within SMa0545 at 291.290 kb on + strand, within SMa0545 at 291.290 kb on + strand, within SMa0545 at 291.337 kb on + strand, within SMa0545 at 291.337 kb on + strand, within SMa0545 at 291.350 kb on - strand, within SMa0545 at 291.490 kb on + strand, within SMa0545 at 292.223 kb on - strand at 292.264 kb on - strand at 292.276 kb on + strand at 292.276 kb on + strand at 292.341 kb on - strand at 292.368 kb on + strand, within SMa0551 at 292.463 kb on + strand, within SMa0551 at 292.524 kb on + strand, within SMa0551 at 292.525 kb on - strand, within SMa0551 at 292.525 kb on - strand, within SMa0551 at 292.539 kb on - strand, within SMa0551 at 292.539 kb on - strand, within SMa0551 at 292.801 kb on + strand, within SMa0551 at 292.910 kb on - strand, within SMa0551 at 292.910 kb on - strand, within SMa0551 at 293.077 kb on + strand, within SMa0551 at 293.078 kb on - strand, within SMa0551 at 293.080 kb on + strand, within SMa0551 at 293.100 kb on + strand, within SMa0551 at 293.101 kb on - strand, within SMa0551 at 293.101 kb on - strand, within SMa0551 at 293.101 kb on - strand, within SMa0551 at 293.151 kb on - strand, within SMa0551 at 293.292 kb on + strand, within SMa0551 at 293.446 kb on + strand at 293.447 kb on - strand at 293.447 kb on - strand at 293.489 kb on + strand at 293.489 kb on + strand at 293.489 kb on + strand at 293.489 kb on + strand at 293.490 kb on - strand at 293.490 kb on - strand at 293.559 kb on + strand at 293.595 kb on + strand at 293.595 kb on + strand at 293.596 kb on - strand at 293.596 kb on - strand at 293.601 kb on + strand at 293.602 kb on - strand at 293.602 kb on - strand at 293.602 kb on - strand at 293.702 kb on + strand, within SMa0552 at 293.736 kb on + strand, within SMa0552 at 293.955 kb on + strand, within SMa0552 at 293.963 kb on - strand, within SMa0552 at 293.996 kb on + strand, within SMa0552 at 293.997 kb on - strand, within SMa0552 at 293.997 kb on - strand, within SMa0552 at 293.997 kb on - strand, within SMa0552 at 293.997 kb on - strand, within SMa0552 at 294.057 kb on + strand at 294.058 kb on - strand at 294.058 kb on - strand at 294.222 kb on - strand, within SMa0554 at 294.222 kb on - strand, within SMa0554 at 294.222 kb on - strand, within SMa0554 at 294.222 kb on - strand, within SMa0554 at 294.233 kb on + strand, within SMa0554 at 294.259 kb on - strand, within SMa0554 at 294.259 kb on - strand, within SMa0554 at 294.293 kb on + strand, within SMa0554 at 294.399 kb on - strand, within SMa0554 at 294.425 kb on + strand, within SMa0554 at 294.426 kb on - strand, within SMa0554
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 291,231 + +0.1 291,290 + SMa0545 0.21 +1.1 291,290 + SMa0545 0.21 -0.1 291,290 + SMa0545 0.21 +1.2 291,290 + SMa0545 0.21 +0.4 291,337 + SMa0545 0.32 +0.3 291,337 + SMa0545 0.32 +1.0 291,350 - SMa0545 0.34 -1.3 291,490 + SMa0545 0.66 -0.1 292,223 - -0.2 292,264 - -0.7 292,276 + +0.0 292,276 + -0.2 292,341 - -1.4 292,368 + SMa0551 0.12 +0.2 292,463 + SMa0551 0.19 -0.4 292,524 + SMa0551 0.24 -0.3 292,525 - SMa0551 0.24 -0.8 292,525 - SMa0551 0.24 +0.8 292,539 - SMa0551 0.25 -0.8 292,539 - SMa0551 0.25 +0.5 292,801 + SMa0551 0.45 -0.0 292,910 - SMa0551 0.54 -0.1 292,910 - SMa0551 0.54 -0.4 293,077 + SMa0551 0.67 -0.4 293,078 - SMa0551 0.67 -2.4 293,080 + SMa0551 0.67 -0.4 293,100 + SMa0551 0.68 -0.6 293,101 - SMa0551 0.68 +0.1 293,101 - SMa0551 0.68 +0.1 293,101 - SMa0551 0.68 -0.7 293,151 - SMa0551 0.72 +0.2 293,292 + SMa0551 0.83 -0.4 293,446 + +0.5 293,447 - -0.8 293,447 - +0.4 293,489 + -1.9 293,489 + +0.6 293,489 + -0.1 293,489 + +0.1 293,490 - +0.2 293,490 - +0.0 293,559 + +1.1 293,595 + -0.6 293,595 + -0.3 293,596 - +0.6 293,596 - -0.0 293,601 + -0.0 293,602 - -0.8 293,602 - +0.3 293,602 - +1.4 293,702 + SMa0552 0.20 +0.2 293,736 + SMa0552 0.27 +0.1 293,955 + SMa0552 0.72 +0.0 293,963 - SMa0552 0.73 -0.2 293,996 + SMa0552 0.80 -0.0 293,997 - SMa0552 0.80 +0.1 293,997 - SMa0552 0.80 -0.7 293,997 - SMa0552 0.80 -0.3 293,997 - SMa0552 0.80 +0.7 294,057 + +0.2 294,058 - -0.3 294,058 - +0.2 294,222 - SMa0554 0.19 -0.3 294,222 - SMa0554 0.19 +0.1 294,222 - SMa0554 0.19 +0.2 294,222 - SMa0554 0.19 -1.1 294,233 + SMa0554 0.20 -0.1 294,259 - SMa0554 0.24 -0.1 294,259 - SMa0554 0.24 -0.2 294,293 + SMa0554 0.28 +0.1 294,399 - SMa0554 0.41 +0.3 294,425 + SMa0554 0.44 +0.1 294,426 - SMa0554 0.44 +0.5
Or see this region's nucleotide sequence