Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20828 and SM_b21663 overlap by 4 nucleotides SM_b21663 and SM_b21664 are separated by 99 nucleotides SM_b21664 and SM_b21665 are separated by 57 nucleotides SM_b21665 and SM_b20829 are separated by 46 nucleotides
SM_b20828: SM_b20828 - hypothetical protein, at 618,428 to 618,703
_b20828
SM_b21663: SM_b21663 - hypothetical protein, at 618,700 to 619,116
_b21663
SM_b21664: SM_b21664 - hypothetical protein, at 619,216 to 619,485
_b21664
SM_b21665: SM_b21665 - hypothetical protein, at 619,543 to 619,899
_b21665
SM_b20829: SM_b20829 - secreted calcium-binding protein, at 619,946 to 621,625
_b20829
Position (kb) 619
620 Strain fitness (log2 ratio) -2
-1
0
1
2 at 618.354 kb on + strand at 618.355 kb on - strand at 618.394 kb on - strand at 618.479 kb on + strand, within SM_b20828 at 618.479 kb on + strand, within SM_b20828 at 618.479 kb on + strand, within SM_b20828 at 618.491 kb on + strand, within SM_b20828 at 618.492 kb on - strand, within SM_b20828 at 618.492 kb on - strand, within SM_b20828 at 618.492 kb on - strand, within SM_b20828 at 618.492 kb on - strand, within SM_b20828 at 618.537 kb on - strand, within SM_b20828 at 618.789 kb on + strand, within SM_b21663 at 618.941 kb on + strand, within SM_b21663 at 618.954 kb on - strand, within SM_b21663 at 619.084 kb on + strand at 619.085 kb on - strand at 619.231 kb on + strand at 619.293 kb on - strand, within SM_b21664 at 619.402 kb on + strand, within SM_b21664 at 619.402 kb on + strand, within SM_b21664 at 619.402 kb on + strand, within SM_b21664 at 619.402 kb on + strand, within SM_b21664 at 619.403 kb on - strand, within SM_b21664 at 619.403 kb on - strand, within SM_b21664 at 619.435 kb on + strand, within SM_b21664 at 619.435 kb on + strand, within SM_b21664 at 619.435 kb on + strand, within SM_b21664 at 619.436 kb on - strand, within SM_b21664 at 619.436 kb on - strand, within SM_b21664 at 619.436 kb on - strand, within SM_b21664 at 619.436 kb on - strand, within SM_b21664 at 619.755 kb on + strand, within SM_b21665 at 619.756 kb on - strand, within SM_b21665 at 619.756 kb on - strand, within SM_b21665 at 619.892 kb on + strand at 619.893 kb on - strand at 619.935 kb on - strand at 619.978 kb on + strand at 619.978 kb on + strand at 619.979 kb on - strand at 620.067 kb on + strand at 620.123 kb on + strand, within SM_b20829 at 620.123 kb on + strand, within SM_b20829 at 620.124 kb on - strand, within SM_b20829 at 620.124 kb on - strand, within SM_b20829 at 620.124 kb on - strand, within SM_b20829 at 620.185 kb on + strand, within SM_b20829 at 620.186 kb on - strand, within SM_b20829 at 620.245 kb on + strand, within SM_b20829 at 620.246 kb on - strand, within SM_b20829 at 620.248 kb on + strand, within SM_b20829 at 620.288 kb on - strand, within SM_b20829 at 620.312 kb on + strand, within SM_b20829 at 620.312 kb on + strand, within SM_b20829 at 620.313 kb on - strand, within SM_b20829 at 620.421 kb on - strand, within SM_b20829 at 620.434 kb on + strand, within SM_b20829 at 620.435 kb on - strand, within SM_b20829 at 620.440 kb on + strand, within SM_b20829 at 620.441 kb on - strand, within SM_b20829 at 620.441 kb on - strand, within SM_b20829 at 620.473 kb on + strand, within SM_b20829 at 620.473 kb on + strand, within SM_b20829 at 620.473 kb on + strand at 620.474 kb on - strand, within SM_b20829 at 620.474 kb on - strand, within SM_b20829
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 618,354 + -0.3 618,355 - -0.5 618,394 - +0.8 618,479 + SM_b20828 0.18 +0.2 618,479 + SM_b20828 0.18 +0.1 618,479 + SM_b20828 0.18 +0.4 618,491 + SM_b20828 0.23 -0.1 618,492 - SM_b20828 0.23 +0.2 618,492 - SM_b20828 0.23 +0.4 618,492 - SM_b20828 0.23 +0.4 618,492 - SM_b20828 0.23 +0.3 618,537 - SM_b20828 0.39 -1.2 618,789 + SM_b21663 0.21 -0.1 618,941 + SM_b21663 0.58 +0.4 618,954 - SM_b21663 0.61 +0.6 619,084 + -2.0 619,085 - +0.5 619,231 + +0.4 619,293 - SM_b21664 0.29 +0.1 619,402 + SM_b21664 0.69 +1.4 619,402 + SM_b21664 0.69 +0.7 619,402 + SM_b21664 0.69 +0.4 619,402 + SM_b21664 0.69 -0.5 619,403 - SM_b21664 0.69 -0.5 619,403 - SM_b21664 0.69 -1.5 619,435 + SM_b21664 0.81 +0.6 619,435 + SM_b21664 0.81 +0.8 619,435 + SM_b21664 0.81 -0.2 619,436 - SM_b21664 0.81 +0.7 619,436 - SM_b21664 0.81 -0.5 619,436 - SM_b21664 0.81 -0.2 619,436 - SM_b21664 0.81 +1.1 619,755 + SM_b21665 0.59 -0.0 619,756 - SM_b21665 0.60 +0.9 619,756 - SM_b21665 0.60 +0.3 619,892 + -0.0 619,893 - -1.0 619,935 - +0.3 619,978 + +0.1 619,978 + -0.5 619,979 - -0.4 620,067 + +0.9 620,123 + SM_b20829 0.11 +0.2 620,123 + SM_b20829 0.11 -0.1 620,124 - SM_b20829 0.11 -0.0 620,124 - SM_b20829 0.11 +1.2 620,124 - SM_b20829 0.11 -1.4 620,185 + SM_b20829 0.14 +0.9 620,186 - SM_b20829 0.14 -0.2 620,245 + SM_b20829 0.18 -0.4 620,246 - SM_b20829 0.18 -1.2 620,248 + SM_b20829 0.18 -0.2 620,288 - SM_b20829 0.20 -0.1 620,312 + SM_b20829 0.22 -0.8 620,312 + SM_b20829 0.22 -0.4 620,313 - SM_b20829 0.22 -0.9 620,421 - SM_b20829 0.28 +0.6 620,434 + SM_b20829 0.29 +0.4 620,435 - SM_b20829 0.29 +0.2 620,440 + SM_b20829 0.29 -0.7 620,441 - SM_b20829 0.29 -0.4 620,441 - SM_b20829 0.29 +0.0 620,473 + SM_b20829 0.31 -0.1 620,473 + SM_b20829 0.31 -0.1 620,473 + +2.3 620,474 - SM_b20829 0.31 -0.7 620,474 - SM_b20829 0.31 +0.4
Or see this region's nucleotide sequence