Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21582 and SM_b21583 are separated by 17 nucleotides SM_b21583 and SM_b21584 are separated by 39 nucleotides SM_b21584 and SM_b21585 overlap by 4 nucleotides
SM_b21582: SM_b21582 - exoD-like membrane protein, at 1,121,890 to 1,122,522
_b21582
SM_b21583: SM_b21583 - hypothetical protein, at 1,122,540 to 1,122,902
_b21583
SM_b21584: SM_b21584 - hypothetical protein, at 1,122,942 to 1,123,799
_b21584
SM_b21585: SM_b21585 - hypothetical protein, at 1,123,796 to 1,125,682
_b21585
Position (kb)
1122
1123
1124 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1121.962 kb on - strand, within SM_b21582 at 1121.962 kb on - strand, within SM_b21582 at 1122.177 kb on + strand, within SM_b21582 at 1122.177 kb on + strand, within SM_b21582 at 1122.178 kb on - strand, within SM_b21582 at 1122.389 kb on + strand, within SM_b21582 at 1122.402 kb on + strand, within SM_b21582 at 1122.534 kb on + strand at 1122.535 kb on - strand at 1122.535 kb on - strand at 1122.604 kb on + strand, within SM_b21583 at 1122.641 kb on - strand, within SM_b21583 at 1122.684 kb on - strand, within SM_b21583 at 1122.711 kb on - strand, within SM_b21583 at 1122.727 kb on - strand, within SM_b21583 at 1122.767 kb on + strand, within SM_b21583 at 1122.937 kb on - strand at 1123.046 kb on + strand, within SM_b21584 at 1123.249 kb on - strand, within SM_b21584 at 1123.249 kb on - strand, within SM_b21584 at 1123.283 kb on - strand, within SM_b21584 at 1123.283 kb on - strand, within SM_b21584 at 1123.341 kb on + strand at 1123.341 kb on + strand, within SM_b21584 at 1123.341 kb on + strand, within SM_b21584 at 1123.341 kb on + strand, within SM_b21584 at 1123.344 kb on + strand, within SM_b21584 at 1123.345 kb on - strand, within SM_b21584 at 1123.420 kb on - strand, within SM_b21584 at 1123.420 kb on - strand, within SM_b21584 at 1123.732 kb on + strand at 1123.733 kb on - strand at 1123.773 kb on - strand at 1123.951 kb on - strand at 1124.047 kb on + strand, within SM_b21585 at 1124.201 kb on - strand, within SM_b21585 at 1124.599 kb on - strand, within SM_b21585 at 1124.748 kb on - strand, within SM_b21585 at 1124.756 kb on + strand, within SM_b21585 at 1124.757 kb on - strand, within SM_b21585 at 1124.757 kb on - strand, within SM_b21585
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 1,121,962 - SM_b21582 0.11 -0.0 1,121,962 - SM_b21582 0.11 +0.3 1,122,177 + SM_b21582 0.45 +1.1 1,122,177 + SM_b21582 0.45 +0.1 1,122,178 - SM_b21582 0.45 -0.6 1,122,389 + SM_b21582 0.79 +1.0 1,122,402 + SM_b21582 0.81 -0.5 1,122,534 + +1.7 1,122,535 - -0.1 1,122,535 - -0.3 1,122,604 + SM_b21583 0.18 -0.1 1,122,641 - SM_b21583 0.28 +0.2 1,122,684 - SM_b21583 0.40 +2.9 1,122,711 - SM_b21583 0.47 -1.3 1,122,727 - SM_b21583 0.52 +0.5 1,122,767 + SM_b21583 0.63 -0.0 1,122,937 - -0.2 1,123,046 + SM_b21584 0.12 -0.4 1,123,249 - SM_b21584 0.36 -0.1 1,123,249 - SM_b21584 0.36 -0.4 1,123,283 - SM_b21584 0.40 -0.2 1,123,283 - SM_b21584 0.40 -0.4 1,123,341 + -0.0 1,123,341 + SM_b21584 0.47 +0.3 1,123,341 + SM_b21584 0.47 +0.9 1,123,341 + SM_b21584 0.47 -0.1 1,123,344 + SM_b21584 0.47 -0.9 1,123,345 - SM_b21584 0.47 +0.1 1,123,420 - SM_b21584 0.56 +0.5 1,123,420 - SM_b21584 0.56 -0.1 1,123,732 + -0.3 1,123,733 - +0.2 1,123,773 - -0.5 1,123,951 - -0.2 1,124,047 + SM_b21585 0.13 +0.5 1,124,201 - SM_b21585 0.21 -0.2 1,124,599 - SM_b21585 0.43 -0.1 1,124,748 - SM_b21585 0.50 -0.1 1,124,756 + SM_b21585 0.51 +0.5 1,124,757 - SM_b21585 0.51 +0.5 1,124,757 - SM_b21585 0.51 +0.7
Or see this region's nucleotide sequence