Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21211 and SM_b21212 are separated by 111 nucleotides SM_b21212 and SM_b21667 are separated by 70 nucleotides SM_b21667 and SM_b21213 overlap by 8 nucleotides
SM_b21211: SM_b21211 - hypothetical protein, at 964,016 to 965,782
_b21211
SM_b21212: SM_b21212 - hypothetical protein, at 965,894 to 966,274
_b21212
SM_b21667: SM_b21667 - hypothetical protein, at 966,345 to 966,524
_b21667
SM_b21213: SM_b21213 - serinethreonine protein phosphatase, at 966,517 to 967,176
_b21213
Position (kb) 965
966
967 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 964.932 kb on - strand, within SM_b21211 at 964.933 kb on + strand, within SM_b21211 at 965.184 kb on + strand, within SM_b21211 at 965.184 kb on + strand, within SM_b21211 at 965.184 kb on + strand, within SM_b21211 at 965.184 kb on + strand, within SM_b21211 at 965.204 kb on + strand, within SM_b21211 at 965.205 kb on - strand, within SM_b21211 at 965.207 kb on + strand, within SM_b21211 at 965.208 kb on - strand, within SM_b21211 at 965.305 kb on + strand, within SM_b21211 at 965.308 kb on + strand, within SM_b21211 at 965.308 kb on + strand, within SM_b21211 at 965.308 kb on + strand, within SM_b21211 at 965.309 kb on - strand, within SM_b21211 at 965.309 kb on - strand, within SM_b21211 at 965.309 kb on - strand, within SM_b21211 at 965.309 kb on - strand, within SM_b21211 at 965.309 kb on - strand, within SM_b21211 at 965.318 kb on + strand, within SM_b21211 at 965.393 kb on + strand, within SM_b21211 at 965.393 kb on + strand, within SM_b21211 at 965.393 kb on + strand, within SM_b21211 at 965.393 kb on + strand, within SM_b21211 at 965.393 kb on + strand, within SM_b21211 at 965.393 kb on + strand, within SM_b21211 at 965.393 kb on + strand, within SM_b21211 at 965.393 kb on + strand, within SM_b21211 at 965.393 kb on + strand, within SM_b21211 at 965.394 kb on - strand, within SM_b21211 at 965.394 kb on - strand, within SM_b21211 at 965.394 kb on - strand, within SM_b21211 at 965.394 kb on - strand, within SM_b21211 at 965.394 kb on - strand, within SM_b21211 at 965.394 kb on - strand, within SM_b21211 at 965.396 kb on - strand, within SM_b21211 at 965.396 kb on - strand, within SM_b21211 at 965.435 kb on + strand, within SM_b21211 at 965.630 kb on + strand at 965.630 kb on + strand at 965.631 kb on - strand at 965.631 kb on - strand at 965.791 kb on + strand at 965.836 kb on - strand at 965.876 kb on - strand at 966.014 kb on - strand, within SM_b21212 at 966.205 kb on + strand, within SM_b21212 at 966.205 kb on + strand, within SM_b21212 at 966.206 kb on - strand, within SM_b21212 at 966.206 kb on - strand, within SM_b21212 at 966.272 kb on + strand at 966.364 kb on - strand, within SM_b21667 at 966.372 kb on + strand, within SM_b21667 at 966.421 kb on + strand, within SM_b21667 at 966.422 kb on - strand, within SM_b21667 at 966.464 kb on + strand at 966.998 kb on - strand, within SM_b21213 at 966.998 kb on - strand, within SM_b21213 at 966.998 kb on - strand, within SM_b21213 at 966.998 kb on - strand, within SM_b21213 at 966.998 kb on - strand, within SM_b21213 at 967.026 kb on + strand, within SM_b21213 at 967.169 kb on - strand at 967.169 kb on - strand at 967.174 kb on + strand at 967.175 kb on - strand at 967.175 kb on - strand at 967.194 kb on + strand at 967.194 kb on + strand at 967.195 kb on - strand at 967.195 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 964,932 - SM_b21211 0.52 +0.2 964,933 + SM_b21211 0.52 -0.3 965,184 + SM_b21211 0.66 -0.0 965,184 + SM_b21211 0.66 -0.2 965,184 + SM_b21211 0.66 +1.0 965,184 + SM_b21211 0.66 +0.5 965,204 + SM_b21211 0.67 +0.2 965,205 - SM_b21211 0.67 +0.0 965,207 + SM_b21211 0.67 -0.2 965,208 - SM_b21211 0.67 +0.7 965,305 + SM_b21211 0.73 -0.6 965,308 + SM_b21211 0.73 +1.3 965,308 + SM_b21211 0.73 +0.7 965,308 + SM_b21211 0.73 -0.6 965,309 - SM_b21211 0.73 +0.1 965,309 - SM_b21211 0.73 -1.0 965,309 - SM_b21211 0.73 -0.2 965,309 - SM_b21211 0.73 -1.0 965,309 - SM_b21211 0.73 +0.1 965,318 + SM_b21211 0.74 +0.8 965,393 + SM_b21211 0.78 -0.5 965,393 + SM_b21211 0.78 -0.3 965,393 + SM_b21211 0.78 -1.5 965,393 + SM_b21211 0.78 -0.4 965,393 + SM_b21211 0.78 -0.2 965,393 + SM_b21211 0.78 -1.0 965,393 + SM_b21211 0.78 -0.0 965,393 + SM_b21211 0.78 -0.4 965,393 + SM_b21211 0.78 -0.9 965,394 - SM_b21211 0.78 +0.1 965,394 - SM_b21211 0.78 +0.6 965,394 - SM_b21211 0.78 -0.1 965,394 - SM_b21211 0.78 -0.1 965,394 - SM_b21211 0.78 -0.8 965,394 - SM_b21211 0.78 -2.2 965,396 - SM_b21211 0.78 +1.3 965,396 - SM_b21211 0.78 -1.3 965,435 + SM_b21211 0.80 +1.3 965,630 + +0.3 965,630 + -0.0 965,631 - +0.3 965,631 - +0.6 965,791 + -0.3 965,836 - +0.1 965,876 - -0.1 966,014 - SM_b21212 0.31 -1.2 966,205 + SM_b21212 0.82 -1.3 966,205 + SM_b21212 0.82 -0.7 966,206 - SM_b21212 0.82 -0.6 966,206 - SM_b21212 0.82 -1.5 966,272 + -0.6 966,364 - SM_b21667 0.11 +0.3 966,372 + SM_b21667 0.15 -0.2 966,421 + SM_b21667 0.42 -0.1 966,422 - SM_b21667 0.43 +0.4 966,464 + -1.0 966,998 - SM_b21213 0.73 -2.9 966,998 - SM_b21213 0.73 -2.0 966,998 - SM_b21213 0.73 -1.0 966,998 - SM_b21213 0.73 -1.2 966,998 - SM_b21213 0.73 -1.0 967,026 + SM_b21213 0.77 +0.5 967,169 - +0.1 967,169 - +0.2 967,174 + +0.4 967,175 - +0.2 967,175 - +0.5 967,194 + +0.1 967,194 + -0.1 967,195 - +0.7 967,195 - +0.1
Or see this region's nucleotide sequence