Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20945 and SM_b20946 are separated by 52 nucleotides SM_b20946 and SM_b20947 are separated by 772 nucleotides
SM_b20945: SM_b20945 - hypothetical protein, at 1,171,541 to 1,172,806
_b20945
SM_b20946: SM_b20946 - galactosyltransferase, at 1,172,859 to 1,173,539
_b20946
SM_b20947: SM_b20947 - posttranscriptional regulator, repressor protein, at 1,174,312 to 1,174,608
_b20947
Position (kb)
1172
1173
1174 Strain fitness (log2 ratio)
-1
0
1 at 1172.765 kb on - strand at 1172.945 kb on - strand, within SM_b20946 at 1172.945 kb on - strand, within SM_b20946 at 1172.945 kb on - strand, within SM_b20946 at 1172.974 kb on + strand, within SM_b20946 at 1173.037 kb on + strand, within SM_b20946 at 1173.158 kb on + strand, within SM_b20946 at 1173.230 kb on - strand, within SM_b20946 at 1173.291 kb on - strand, within SM_b20946 at 1173.291 kb on - strand, within SM_b20946 at 1173.346 kb on + strand, within SM_b20946 at 1173.347 kb on - strand, within SM_b20946 at 1173.347 kb on - strand, within SM_b20946 at 1173.461 kb on + strand, within SM_b20946 at 1173.501 kb on - strand at 1173.555 kb on + strand at 1173.556 kb on - strand at 1173.596 kb on - strand at 1173.606 kb on + strand at 1173.736 kb on + strand at 1173.741 kb on + strand at 1173.741 kb on + strand at 1173.788 kb on - strand at 1173.805 kb on - strand at 1173.810 kb on + strand at 1173.813 kb on + strand at 1173.999 kb on + strand at 1173.999 kb on + strand at 1174.000 kb on - strand at 1174.046 kb on + strand at 1174.047 kb on - strand at 1174.047 kb on - strand at 1174.047 kb on - strand at 1174.179 kb on + strand at 1174.180 kb on - strand at 1174.180 kb on - strand at 1174.180 kb on - strand at 1174.200 kb on - strand at 1174.232 kb on + strand at 1174.235 kb on + strand at 1174.237 kb on + strand at 1174.237 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 1,172,765 - +0.1 1,172,945 - SM_b20946 0.13 -0.4 1,172,945 - SM_b20946 0.13 +0.8 1,172,945 - SM_b20946 0.13 -0.0 1,172,974 + SM_b20946 0.17 +0.3 1,173,037 + SM_b20946 0.26 +0.2 1,173,158 + SM_b20946 0.44 -1.0 1,173,230 - SM_b20946 0.54 +0.4 1,173,291 - SM_b20946 0.63 +0.7 1,173,291 - SM_b20946 0.63 +0.5 1,173,346 + SM_b20946 0.72 +0.5 1,173,347 - SM_b20946 0.72 +1.1 1,173,347 - SM_b20946 0.72 +0.4 1,173,461 + SM_b20946 0.88 +0.4 1,173,501 - +0.6 1,173,555 + +0.6 1,173,556 - +0.6 1,173,596 - +0.6 1,173,606 + +0.1 1,173,736 + +0.4 1,173,741 + -0.3 1,173,741 + +0.7 1,173,788 - +0.0 1,173,805 - +0.0 1,173,810 + +0.3 1,173,813 + +0.5 1,173,999 + +0.7 1,173,999 + +1.0 1,174,000 - +1.2 1,174,046 + -1.5 1,174,047 - +0.0 1,174,047 - -0.0 1,174,047 - -0.1 1,174,179 + +1.6 1,174,180 - -1.3 1,174,180 - -0.9 1,174,180 - +0.5 1,174,200 - -0.2 1,174,232 + -1.0 1,174,235 + -1.7 1,174,237 + +0.1 1,174,237 + -0.4
Or see this region's nucleotide sequence