Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20563 and SM_b20803 are separated by 230 nucleotides SM_b20803 and SM_b20804 are separated by 42 nucleotides SM_b20804 and SM_b20805 are separated by 62 nucleotides
SM_b20563: SM_b20563 - hypothetical protein, at 587,215 to 588,129
_b20563
SM_b20803: SM_b20803 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 588,360 to 589,190
_b20803
SM_b20804: SM_b20804 - hypothetical protein, at 589,233 to 589,964
_b20804
SM_b20805: SM_b20805 - glycosyltransferase, at 590,027 to 590,932
_b20805
Position (kb) 588
589
590 Strain fitness (log2 ratio) -2
-1
0
1 at 587.668 kb on - strand, within SM_b20563 at 587.668 kb on - strand, within SM_b20563 at 587.784 kb on - strand, within SM_b20563 at 588.011 kb on + strand, within SM_b20563 at 588.100 kb on - strand at 588.100 kb on - strand at 588.131 kb on + strand at 588.132 kb on - strand at 588.132 kb on - strand at 588.132 kb on - strand at 588.132 kb on - strand at 588.147 kb on + strand at 588.222 kb on + strand at 588.259 kb on - strand at 588.269 kb on + strand at 588.272 kb on - strand at 588.272 kb on - strand at 588.308 kb on + strand at 588.433 kb on - strand at 588.451 kb on + strand, within SM_b20803 at 588.606 kb on - strand, within SM_b20803 at 588.606 kb on - strand, within SM_b20803 at 588.817 kb on + strand, within SM_b20803 at 588.817 kb on + strand, within SM_b20803 at 588.818 kb on - strand, within SM_b20803 at 588.978 kb on - strand, within SM_b20803 at 589.109 kb on - strand at 589.189 kb on - strand at 589.189 kb on - strand at 589.192 kb on + strand at 589.193 kb on - strand at 589.267 kb on + strand at 589.267 kb on + strand at 589.268 kb on - strand at 589.268 kb on - strand at 589.270 kb on - strand at 589.331 kb on + strand, within SM_b20804 at 589.348 kb on + strand, within SM_b20804 at 589.349 kb on - strand, within SM_b20804 at 589.463 kb on + strand, within SM_b20804 at 589.464 kb on - strand, within SM_b20804 at 589.464 kb on - strand, within SM_b20804 at 589.464 kb on - strand, within SM_b20804 at 589.554 kb on + strand, within SM_b20804 at 589.554 kb on + strand, within SM_b20804 at 589.555 kb on - strand, within SM_b20804 at 589.558 kb on + strand, within SM_b20804 at 589.558 kb on + strand, within SM_b20804 at 589.558 kb on + strand, within SM_b20804 at 589.559 kb on - strand, within SM_b20804 at 589.559 kb on - strand, within SM_b20804 at 589.559 kb on - strand, within SM_b20804 at 589.731 kb on - strand, within SM_b20804 at 589.755 kb on + strand, within SM_b20804 at 589.816 kb on - strand, within SM_b20804 at 589.974 kb on + strand at 589.974 kb on + strand at 589.974 kb on + strand at 589.975 kb on - strand at 590.082 kb on + strand at 590.083 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 587,668 - SM_b20563 0.50 -1.4 587,668 - SM_b20563 0.50 -1.4 587,784 - SM_b20563 0.62 -1.5 588,011 + SM_b20563 0.87 -2.4 588,100 - -1.3 588,100 - +0.0 588,131 + -0.9 588,132 - -0.2 588,132 - +0.0 588,132 - -0.3 588,132 - -0.4 588,147 + -0.7 588,222 + -1.3 588,259 - -1.5 588,269 + -0.3 588,272 - -1.1 588,272 - -0.0 588,308 + -0.5 588,433 - +0.6 588,451 + SM_b20803 0.11 -0.1 588,606 - SM_b20803 0.30 -0.6 588,606 - SM_b20803 0.30 +0.0 588,817 + SM_b20803 0.55 +0.5 588,817 + SM_b20803 0.55 -1.7 588,818 - SM_b20803 0.55 -1.6 588,978 - SM_b20803 0.74 -0.1 589,109 - -0.2 589,189 - -0.3 589,189 - +0.0 589,192 + -0.3 589,193 - -0.1 589,267 + -0.8 589,267 + -2.1 589,268 - +0.1 589,268 - -0.2 589,270 - -0.8 589,331 + SM_b20804 0.13 -1.2 589,348 + SM_b20804 0.16 -0.2 589,349 - SM_b20804 0.16 -0.9 589,463 + SM_b20804 0.31 +0.3 589,464 - SM_b20804 0.32 -1.5 589,464 - SM_b20804 0.32 -0.2 589,464 - SM_b20804 0.32 -2.0 589,554 + SM_b20804 0.44 -2.0 589,554 + SM_b20804 0.44 +0.0 589,555 - SM_b20804 0.44 -0.5 589,558 + SM_b20804 0.44 +0.1 589,558 + SM_b20804 0.44 +1.7 589,558 + SM_b20804 0.44 -0.1 589,559 - SM_b20804 0.45 -1.1 589,559 - SM_b20804 0.45 -1.0 589,559 - SM_b20804 0.45 -0.6 589,731 - SM_b20804 0.68 -1.9 589,755 + SM_b20804 0.71 -0.6 589,816 - SM_b20804 0.80 -0.5 589,974 + -0.1 589,974 + +0.6 589,974 + +0.1 589,975 - -1.8 590,082 + +1.0 590,083 - -0.7
Or see this region's nucleotide sequence