Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20551 and SM_b20552 are separated by 751 nucleotides SM_b20552 and SM_b20553 are separated by 20 nucleotides SM_b20553 and SM_b20554 are separated by 357 nucleotides
SM_b20551: SM_b20551 - hypothetical protein, at 576,952 to 577,398
_b20551
SM_b20552: SM_b20552 - hypothetical protein, at 578,150 to 578,881
_b20552
SM_b20553: SM_b20553 - hypothetical protein, at 578,902 to 579,096
_b20553
SM_b20554: SM_b20554 - hypothetical protein, at 579,454 to 579,963
_b20554
Position (kb) 578
579 Strain fitness (log2 ratio) -2
-1
0
1
2 at 577.178 kb on + strand, within SM_b20551 at 577.179 kb on - strand, within SM_b20551 at 577.179 kb on - strand, within SM_b20551 at 577.189 kb on - strand, within SM_b20551 at 577.270 kb on + strand, within SM_b20551 at 577.409 kb on + strand at 577.409 kb on + strand at 577.410 kb on - strand at 577.410 kb on - strand at 577.410 kb on - strand at 577.410 kb on - strand at 577.460 kb on - strand at 577.524 kb on - strand at 577.561 kb on + strand at 577.561 kb on + strand at 577.562 kb on - strand at 577.648 kb on - strand at 577.718 kb on + strand at 577.718 kb on + strand at 577.718 kb on + strand at 577.719 kb on - strand at 577.719 kb on - strand at 577.720 kb on + strand at 577.720 kb on + strand at 577.720 kb on + strand at 577.720 kb on + strand at 577.721 kb on - strand at 577.722 kb on + strand at 577.722 kb on + strand at 577.722 kb on + strand at 577.723 kb on - strand at 577.723 kb on - strand at 577.723 kb on - strand at 577.742 kb on + strand at 577.742 kb on + strand at 577.805 kb on + strand at 577.806 kb on - strand at 577.823 kb on - strand at 577.881 kb on + strand at 577.881 kb on + strand at 577.882 kb on - strand at 577.948 kb on - strand at 578.038 kb on + strand at 578.038 kb on + strand at 578.038 kb on + strand at 578.039 kb on - strand at 578.039 kb on - strand at 578.148 kb on + strand at 578.148 kb on + strand at 578.149 kb on - strand at 578.149 kb on - strand at 578.181 kb on + strand at 578.229 kb on + strand, within SM_b20552 at 578.230 kb on - strand, within SM_b20552 at 578.315 kb on + strand, within SM_b20552 at 578.328 kb on + strand, within SM_b20552 at 578.329 kb on - strand, within SM_b20552 at 578.335 kb on - strand, within SM_b20552 at 578.537 kb on + strand, within SM_b20552 at 578.599 kb on + strand, within SM_b20552 at 578.600 kb on - strand, within SM_b20552 at 578.645 kb on + strand, within SM_b20552 at 578.645 kb on + strand, within SM_b20552 at 578.706 kb on + strand, within SM_b20552 at 578.706 kb on + strand, within SM_b20552 at 578.735 kb on + strand, within SM_b20552 at 578.779 kb on - strand, within SM_b20552 at 578.981 kb on + strand, within SM_b20553 at 579.010 kb on - strand, within SM_b20553 at 579.056 kb on + strand, within SM_b20553 at 579.091 kb on + strand at 579.091 kb on + strand at 579.092 kb on - strand at 579.092 kb on - strand at 579.092 kb on - strand at 579.106 kb on + strand at 579.106 kb on + strand at 579.217 kb on + strand at 579.217 kb on + strand at 579.217 kb on + strand at 579.218 kb on - strand at 579.219 kb on + strand at 579.220 kb on - strand at 579.220 kb on - strand at 579.220 kb on - strand at 579.220 kb on - strand at 579.248 kb on + strand at 579.249 kb on - strand at 579.256 kb on - strand at 579.256 kb on - strand at 579.291 kb on - strand at 579.291 kb on - strand at 579.291 kb on - strand at 579.291 kb on - strand at 579.291 kb on - strand at 579.297 kb on + strand at 579.297 kb on + strand at 579.297 kb on + strand at 579.297 kb on + strand at 579.298 kb on - strand at 579.298 kb on - strand at 579.436 kb on + strand at 579.437 kb on - strand at 579.467 kb on + strand at 579.497 kb on + strand at 579.497 kb on + strand at 579.498 kb on - strand at 579.509 kb on - strand, within SM_b20554 at 579.509 kb on - strand, within SM_b20554 at 579.619 kb on + strand, within SM_b20554 at 579.619 kb on + strand, within SM_b20554 at 579.619 kb on + strand at 579.620 kb on - strand, within SM_b20554 at 579.620 kb on - strand, within SM_b20554 at 579.620 kb on - strand, within SM_b20554 at 579.627 kb on + strand, within SM_b20554 at 579.628 kb on - strand, within SM_b20554 at 579.628 kb on - strand, within SM_b20554 at 579.696 kb on - strand, within SM_b20554
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 577,178 + SM_b20551 0.51 -2.2 577,179 - SM_b20551 0.51 -0.1 577,179 - SM_b20551 0.51 -0.0 577,189 - SM_b20551 0.53 -0.7 577,270 + SM_b20551 0.71 +0.7 577,409 + -0.2 577,409 + -0.1 577,410 - -1.2 577,410 - +0.6 577,410 - -0.4 577,410 - -0.5 577,460 - +0.2 577,524 - +0.0 577,561 + -0.1 577,561 + +0.4 577,562 - -0.1 577,648 - +0.1 577,718 + +1.0 577,718 + -0.6 577,718 + -0.1 577,719 - +0.7 577,719 - +0.2 577,720 + -0.6 577,720 + -1.2 577,720 + +0.1 577,720 + +0.8 577,721 - -0.2 577,722 + -0.5 577,722 + +0.0 577,722 + -0.7 577,723 - +0.6 577,723 - -0.4 577,723 - +0.2 577,742 + +0.1 577,742 + +1.6 577,805 + -0.6 577,806 - -0.2 577,823 - -0.7 577,881 + -0.7 577,881 + +0.6 577,882 - +1.0 577,948 - -0.4 578,038 + +1.1 578,038 + +1.0 578,038 + -0.1 578,039 - +0.3 578,039 - -1.2 578,148 + +0.0 578,148 + -0.7 578,149 - -0.4 578,149 - +0.1 578,181 + -0.2 578,229 + SM_b20552 0.11 +0.4 578,230 - SM_b20552 0.11 +0.4 578,315 + SM_b20552 0.23 +0.0 578,328 + SM_b20552 0.24 +0.0 578,329 - SM_b20552 0.24 +0.2 578,335 - SM_b20552 0.25 +0.8 578,537 + SM_b20552 0.53 -0.8 578,599 + SM_b20552 0.61 +0.9 578,600 - SM_b20552 0.61 -0.2 578,645 + SM_b20552 0.68 +0.5 578,645 + SM_b20552 0.68 +0.7 578,706 + SM_b20552 0.76 +0.6 578,706 + SM_b20552 0.76 -0.2 578,735 + SM_b20552 0.80 +0.8 578,779 - SM_b20552 0.86 +0.2 578,981 + SM_b20553 0.41 +0.0 579,010 - SM_b20553 0.55 +0.3 579,056 + SM_b20553 0.79 -0.1 579,091 + +0.7 579,091 + -0.2 579,092 - -0.2 579,092 - +0.0 579,092 - -0.1 579,106 + +0.5 579,106 + +0.5 579,217 + +0.0 579,217 + -0.5 579,217 + +0.2 579,218 - +0.3 579,219 + +0.2 579,220 - +0.8 579,220 - +0.4 579,220 - +1.1 579,220 - +0.9 579,248 + -1.2 579,249 - +1.0 579,256 - +0.3 579,256 - -0.9 579,291 - +0.2 579,291 - -0.5 579,291 - +0.2 579,291 - -2.0 579,291 - -0.1 579,297 + -1.1 579,297 + -0.1 579,297 + +0.9 579,297 + -0.2 579,298 - -0.1 579,298 - +0.3 579,436 + +0.3 579,437 - -0.2 579,467 + +0.6 579,497 + +0.5 579,497 + +0.1 579,498 - +0.2 579,509 - SM_b20554 0.11 -0.3 579,509 - SM_b20554 0.11 -0.1 579,619 + SM_b20554 0.32 +1.9 579,619 + SM_b20554 0.32 +0.9 579,619 + +1.3 579,620 - SM_b20554 0.33 -0.6 579,620 - SM_b20554 0.33 -0.2 579,620 - SM_b20554 0.33 +0.4 579,627 + SM_b20554 0.34 -1.4 579,628 - SM_b20554 0.34 -0.1 579,628 - SM_b20554 0.34 -0.1 579,696 - SM_b20554 0.47 -1.0
Or see this region's nucleotide sequence