Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20374 and SM_b20375 are separated by 20 nucleotides SM_b20375 and SM_b20376 are separated by 203 nucleotides SM_b20376 and SM_b20377 are separated by 43 nucleotides
SM_b20374: SM_b20374 - substrate-binding protein, at 385,654 to 386,646
_b20374
SM_b20375: SM_b20375 - transcriptional regulator, at 386,667 to 387,437
_b20375
SM_b20376: SM_b20376 - hypothetical protein, at 387,641 to 388,021
_b20376
SM_b20377: SM_b20377 - translation initiation inhibitor protein, at 388,065 to 388,448
_b20377
Position (kb) 386
387
388 Strain fitness (log2 ratio) -1
0
1
2 at 386.205 kb on - strand, within SM_b20374 at 386.315 kb on + strand, within SM_b20374 at 386.517 kb on - strand, within SM_b20374 at 386.556 kb on - strand at 386.724 kb on + strand at 386.724 kb on + strand at 386.724 kb on + strand at 386.725 kb on - strand at 386.725 kb on - strand at 386.725 kb on - strand at 386.725 kb on - strand at 386.725 kb on - strand at 386.725 kb on - strand at 386.725 kb on - strand at 386.728 kb on + strand at 386.728 kb on + strand at 386.729 kb on - strand at 386.845 kb on + strand, within SM_b20375 at 386.927 kb on - strand, within SM_b20375 at 387.753 kb on + strand, within SM_b20376 at 387.755 kb on + strand, within SM_b20376 at 387.756 kb on - strand, within SM_b20376 at 387.756 kb on - strand, within SM_b20376 at 387.795 kb on + strand, within SM_b20376 at 387.795 kb on + strand, within SM_b20376 at 387.796 kb on - strand, within SM_b20376 at 387.866 kb on + strand, within SM_b20376 at 387.867 kb on - strand, within SM_b20376 at 387.867 kb on - strand, within SM_b20376 at 387.929 kb on + strand, within SM_b20376 at 387.930 kb on - strand, within SM_b20376 at 388.180 kb on + strand, within SM_b20377 at 388.180 kb on + strand, within SM_b20377 at 388.180 kb on + strand, within SM_b20377 at 388.180 kb on + strand, within SM_b20377 at 388.180 kb on + strand, within SM_b20377 at 388.181 kb on - strand, within SM_b20377
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 386,205 - SM_b20374 0.55 -0.5 386,315 + SM_b20374 0.67 +2.0 386,517 - SM_b20374 0.87 -0.0 386,556 - +0.0 386,724 + -0.1 386,724 + -0.5 386,724 + +0.5 386,725 - -0.7 386,725 - -1.3 386,725 - +0.8 386,725 - -0.5 386,725 - +0.4 386,725 - +1.2 386,725 - +0.1 386,728 + +0.0 386,728 + -0.3 386,729 - +1.0 386,845 + SM_b20375 0.23 +0.7 386,927 - SM_b20375 0.34 +0.1 387,753 + SM_b20376 0.29 +0.2 387,755 + SM_b20376 0.30 +0.1 387,756 - SM_b20376 0.30 -0.1 387,756 - SM_b20376 0.30 +0.1 387,795 + SM_b20376 0.40 -0.5 387,795 + SM_b20376 0.40 -0.2 387,796 - SM_b20376 0.41 -1.0 387,866 + SM_b20376 0.59 +0.8 387,867 - SM_b20376 0.59 +0.0 387,867 - SM_b20376 0.59 -0.4 387,929 + SM_b20376 0.76 +0.8 387,930 - SM_b20376 0.76 +0.5 388,180 + SM_b20377 0.30 +0.1 388,180 + SM_b20377 0.30 +0.7 388,180 + SM_b20377 0.30 -0.4 388,180 + SM_b20377 0.30 -0.4 388,180 + SM_b20377 0.30 +0.5 388,181 - SM_b20377 0.30 +0.1
Or see this region's nucleotide sequence