Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20352 and SM_b20353 are separated by 5 nucleotides SM_b20353 and SM_b20354 overlap by 4 nucleotides
SM_b20352: SM_b20352 - sugar ABC transporter permease, at 359,762 to 360,826
_b20352
SM_b20353: SM_b20353 - oxidoreductase, at 360,832 to 361,866
_b20353
SM_b20354: SM_b20354 - hypothetical protein, at 361,863 to 363,782
_b20354
Position (kb) 360
361
362 Strain fitness (log2 ratio) -2
-1
0
1 at 359.914 kb on - strand, within SM_b20352 at 359.914 kb on - strand, within SM_b20352 at 360.087 kb on - strand, within SM_b20352 at 360.163 kb on + strand, within SM_b20352 at 360.377 kb on + strand, within SM_b20352 at 360.390 kb on - strand, within SM_b20352 at 360.392 kb on - strand, within SM_b20352 at 360.392 kb on - strand, within SM_b20352 at 360.392 kb on - strand, within SM_b20352 at 360.486 kb on - strand, within SM_b20352 at 360.486 kb on - strand, within SM_b20352 at 360.486 kb on - strand, within SM_b20352 at 360.992 kb on - strand, within SM_b20353 at 361.233 kb on - strand, within SM_b20353 at 361.284 kb on - strand, within SM_b20353 at 361.390 kb on + strand, within SM_b20353 at 361.519 kb on + strand, within SM_b20353 at 361.520 kb on - strand, within SM_b20353 at 361.636 kb on - strand, within SM_b20353 at 361.764 kb on + strand at 361.813 kb on + strand at 361.814 kb on - strand at 361.890 kb on + strand at 361.891 kb on + strand at 361.892 kb on - strand at 361.934 kb on - strand at 362.159 kb on + strand, within SM_b20354 at 362.466 kb on + strand, within SM_b20354 at 362.475 kb on + strand, within SM_b20354 at 362.475 kb on + strand, within SM_b20354 at 362.475 kb on + strand, within SM_b20354 at 362.475 kb on + strand, within SM_b20354 at 362.476 kb on - strand, within SM_b20354 at 362.476 kb on - strand, within SM_b20354 at 362.686 kb on + strand, within SM_b20354 at 362.686 kb on + strand, within SM_b20354
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 359,914 - SM_b20352 0.14 -0.3 359,914 - SM_b20352 0.14 +0.4 360,087 - SM_b20352 0.31 +0.0 360,163 + SM_b20352 0.38 +0.4 360,377 + SM_b20352 0.58 -1.2 360,390 - SM_b20352 0.59 +0.0 360,392 - SM_b20352 0.59 +0.3 360,392 - SM_b20352 0.59 +0.4 360,392 - SM_b20352 0.59 -0.0 360,486 - SM_b20352 0.68 -0.2 360,486 - SM_b20352 0.68 +0.2 360,486 - SM_b20352 0.68 -1.3 360,992 - SM_b20353 0.15 -0.3 361,233 - SM_b20353 0.39 -1.1 361,284 - SM_b20353 0.44 -1.1 361,390 + SM_b20353 0.54 -2.2 361,519 + SM_b20353 0.66 -0.9 361,520 - SM_b20353 0.66 -0.5 361,636 - SM_b20353 0.78 -0.0 361,764 + +0.3 361,813 + +0.3 361,814 - -0.4 361,890 + -0.5 361,891 + +0.3 361,892 - +0.8 361,934 - +0.4 362,159 + SM_b20354 0.15 -0.2 362,466 + SM_b20354 0.31 +0.0 362,475 + SM_b20354 0.32 +0.2 362,475 + SM_b20354 0.32 -0.2 362,475 + SM_b20354 0.32 +0.4 362,475 + SM_b20354 0.32 +0.2 362,476 - SM_b20354 0.32 -0.1 362,476 - SM_b20354 0.32 +0.2 362,686 + SM_b20354 0.43 -0.6 362,686 + SM_b20354 0.43 -0.4
Or see this region's nucleotide sequence