Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20338 and SM_b20339 are separated by 88 nucleotides SM_b20339 and SM_b20340 are separated by 69 nucleotides SM_b20340 and SM_b20341 are separated by 204 nucleotides
SM_b20338: SM_b20338 - efflux protein, at 343,485 to 344,708
_b20338
SM_b20339: SM_b20339 - hypothetical protein, at 344,797 to 345,279
_b20339
SM_b20340: SM_b20340 - hypothetical protein, at 345,349 to 345,528
_b20340
SM_b20341: SM_b20341 - hypothetical protein, at 345,733 to 345,918
_b20341
Position (kb) 344
345
346 Strain fitness (log2 ratio) -1
0
1 at 343.844 kb on - strand, within SM_b20338 at 343.877 kb on - strand, within SM_b20338 at 343.877 kb on - strand, within SM_b20338 at 343.941 kb on + strand, within SM_b20338 at 343.941 kb on + strand, within SM_b20338 at 343.941 kb on + strand, within SM_b20338 at 343.941 kb on + strand, within SM_b20338 at 343.941 kb on + strand, within SM_b20338 at 343.942 kb on - strand, within SM_b20338 at 343.942 kb on - strand, within SM_b20338 at 343.944 kb on - strand, within SM_b20338 at 343.979 kb on - strand, within SM_b20338 at 343.979 kb on - strand, within SM_b20338 at 343.982 kb on + strand, within SM_b20338 at 343.982 kb on + strand, within SM_b20338 at 343.983 kb on - strand, within SM_b20338 at 344.045 kb on + strand, within SM_b20338 at 344.135 kb on + strand, within SM_b20338 at 344.649 kb on - strand at 344.822 kb on + strand at 344.928 kb on - strand, within SM_b20339 at 344.928 kb on - strand, within SM_b20339 at 344.997 kb on + strand, within SM_b20339 at 344.997 kb on + strand, within SM_b20339 at 344.997 kb on + strand, within SM_b20339 at 344.998 kb on - strand, within SM_b20339 at 345.193 kb on + strand, within SM_b20339 at 345.193 kb on + strand, within SM_b20339 at 345.193 kb on + strand, within SM_b20339 at 345.193 kb on + strand, within SM_b20339 at 345.194 kb on - strand, within SM_b20339 at 345.194 kb on - strand, within SM_b20339 at 345.496 kb on - strand, within SM_b20340 at 345.511 kb on + strand at 346.055 kb on + strand at 346.056 kb on - strand at 346.056 kb on - strand at 346.153 kb on - strand at 346.153 kb on - strand at 346.258 kb on - strand at 346.272 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 343,844 - SM_b20338 0.29 +0.7 343,877 - SM_b20338 0.32 +1.7 343,877 - SM_b20338 0.32 -0.7 343,941 + SM_b20338 0.37 -0.1 343,941 + SM_b20338 0.37 -0.4 343,941 + SM_b20338 0.37 +0.7 343,941 + SM_b20338 0.37 -1.3 343,941 + SM_b20338 0.37 +0.0 343,942 - SM_b20338 0.37 -0.2 343,942 - SM_b20338 0.37 +0.5 343,944 - SM_b20338 0.38 -0.6 343,979 - SM_b20338 0.40 -0.0 343,979 - SM_b20338 0.40 -0.1 343,982 + SM_b20338 0.41 -0.1 343,982 + SM_b20338 0.41 -0.1 343,983 - SM_b20338 0.41 -0.0 344,045 + SM_b20338 0.46 -0.9 344,135 + SM_b20338 0.53 +1.0 344,649 - +0.1 344,822 + -0.6 344,928 - SM_b20339 0.27 +0.4 344,928 - SM_b20339 0.27 -0.8 344,997 + SM_b20339 0.41 -1.5 344,997 + SM_b20339 0.41 +0.1 344,997 + SM_b20339 0.41 +0.3 344,998 - SM_b20339 0.42 +0.1 345,193 + SM_b20339 0.82 -0.5 345,193 + SM_b20339 0.82 -0.8 345,193 + SM_b20339 0.82 -0.7 345,193 + SM_b20339 0.82 -0.3 345,194 - SM_b20339 0.82 -0.0 345,194 - SM_b20339 0.82 -0.6 345,496 - SM_b20340 0.82 -1.6 345,511 + +0.0 346,055 + -0.1 346,056 - +0.6 346,056 - -0.2 346,153 - -1.0 346,153 - +0.7 346,258 - -0.4 346,272 - -0.3
Or see this region's nucleotide sequence