Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20325 and SM_b20326 are separated by 87 nucleotides SM_b20326 and SM_b20327 overlap by 1 nucleotides SM_b20327 and SM_b20328 are separated by 9 nucleotides
SM_b20325: SM_b20325 - ABC transporter for D-trehalose/D-maltose/sucrose, substrate-binding component (ThuE) <small>(from data)</small>, at 328,098 to 329,369
_b20325
SM_b20326: SM_b20326 - ABC transporter for D-trehalose/D-maltose/sucrose, permease component 1 (ThuF) <small>(from data)</small>, at 329,457 to 330,443
_b20326
SM_b20327: SM_b20327 - ABC transporter for D-trehalose/D-maltose/sucrose, permease component 2 (ThuG) <small>(from data)</small>, at 330,443 to 331,273
_b20327
SM_b20328: SM_b20328 - ABC transporter for D-trehalose/D-maltose/sucrose, ATPase component (ThuK) <small>(from data)</small>, at 331,283 to 332,311
_b20328
Position (kb) 329
330
331 Strain fitness (log2 ratio) -1
0
1 at 328.500 kb on + strand, within SM_b20325 at 328.500 kb on + strand, within SM_b20325 at 328.501 kb on - strand, within SM_b20325 at 328.501 kb on - strand, within SM_b20325 at 328.549 kb on - strand, within SM_b20325 at 328.549 kb on - strand, within SM_b20325 at 328.549 kb on - strand, within SM_b20325 at 328.669 kb on - strand, within SM_b20325 at 328.833 kb on + strand, within SM_b20325 at 328.889 kb on + strand, within SM_b20325 at 328.890 kb on - strand, within SM_b20325 at 328.900 kb on - strand, within SM_b20325 at 328.905 kb on + strand, within SM_b20325 at 328.937 kb on - strand, within SM_b20325 at 329.032 kb on - strand, within SM_b20325 at 329.073 kb on + strand, within SM_b20325 at 329.446 kb on - strand at 329.619 kb on + strand, within SM_b20326 at 329.619 kb on + strand, within SM_b20326 at 329.619 kb on + strand, within SM_b20326 at 329.619 kb on + strand, within SM_b20326 at 329.686 kb on - strand, within SM_b20326 at 329.777 kb on + strand, within SM_b20326 at 329.777 kb on + strand, within SM_b20326 at 330.123 kb on + strand, within SM_b20326 at 330.123 kb on + strand, within SM_b20326 at 330.258 kb on + strand, within SM_b20326 at 330.259 kb on - strand, within SM_b20326 at 330.399 kb on + strand at 330.400 kb on - strand at 330.400 kb on - strand at 330.400 kb on - strand at 330.400 kb on - strand at 330.477 kb on - strand at 330.522 kb on - strand at 330.522 kb on - strand at 330.525 kb on - strand at 330.575 kb on + strand, within SM_b20327 at 330.590 kb on - strand, within SM_b20327 at 330.605 kb on + strand, within SM_b20327 at 330.605 kb on + strand, within SM_b20327 at 330.606 kb on - strand, within SM_b20327 at 330.606 kb on - strand, within SM_b20327 at 330.685 kb on - strand, within SM_b20327 at 330.714 kb on - strand, within SM_b20327 at 330.729 kb on + strand, within SM_b20327 at 330.729 kb on + strand, within SM_b20327 at 330.730 kb on - strand, within SM_b20327 at 330.869 kb on + strand, within SM_b20327 at 331.272 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 328,500 + SM_b20325 0.32 +0.4 328,500 + SM_b20325 0.32 -0.1 328,501 - SM_b20325 0.32 -0.1 328,501 - SM_b20325 0.32 -0.1 328,549 - SM_b20325 0.35 -0.3 328,549 - SM_b20325 0.35 +1.2 328,549 - SM_b20325 0.35 +0.0 328,669 - SM_b20325 0.45 +0.2 328,833 + SM_b20325 0.58 -0.5 328,889 + SM_b20325 0.62 +0.1 328,890 - SM_b20325 0.62 +0.0 328,900 - SM_b20325 0.63 +0.6 328,905 + SM_b20325 0.63 -0.4 328,937 - SM_b20325 0.66 +0.4 329,032 - SM_b20325 0.73 +1.7 329,073 + SM_b20325 0.77 -0.2 329,446 - +0.6 329,619 + SM_b20326 0.16 -0.3 329,619 + SM_b20326 0.16 -0.2 329,619 + SM_b20326 0.16 -0.7 329,619 + SM_b20326 0.16 -0.7 329,686 - SM_b20326 0.23 +0.3 329,777 + SM_b20326 0.32 +0.2 329,777 + SM_b20326 0.32 +0.1 330,123 + SM_b20326 0.67 +1.2 330,123 + SM_b20326 0.67 +0.6 330,258 + SM_b20326 0.81 -0.9 330,259 - SM_b20326 0.81 -0.2 330,399 + +0.4 330,400 - +1.3 330,400 - -0.0 330,400 - -0.8 330,400 - +0.9 330,477 - -0.1 330,522 - +0.3 330,522 - +0.2 330,525 - -0.4 330,575 + SM_b20327 0.16 +0.0 330,590 - SM_b20327 0.18 +0.8 330,605 + SM_b20327 0.19 -0.1 330,605 + SM_b20327 0.19 -0.8 330,606 - SM_b20327 0.20 -0.3 330,606 - SM_b20327 0.20 +0.3 330,685 - SM_b20327 0.29 -0.3 330,714 - SM_b20327 0.33 -0.2 330,729 + SM_b20327 0.34 -0.3 330,729 + SM_b20327 0.34 +0.1 330,730 - SM_b20327 0.35 +0.5 330,869 + SM_b20327 0.51 -0.1 331,272 - -0.1
Or see this region's nucleotide sequence