Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20324 and SM_b20325 are separated by 478 nucleotides SM_b20325 and SM_b20326 are separated by 87 nucleotides
SM_b20324: SM_b20324 - ThuR, regulatory protein for trehalosemaltose transport system, at 326,603 to 327,619
_b20324
SM_b20325: SM_b20325 - ABC transporter for D-trehalose/D-maltose/sucrose, substrate-binding component (ThuE) <small>(from data)</small>, at 328,098 to 329,369
_b20325
SM_b20326: SM_b20326 - ABC transporter for D-trehalose/D-maltose/sucrose, permease component 1 (ThuF) <small>(from data)</small>, at 329,457 to 330,443
_b20326
Position (kb) 328
329
330 Strain fitness (log2 ratio) -1
0
1 at 327.105 kb on - strand, within SM_b20324 at 327.105 kb on - strand, within SM_b20324 at 327.105 kb on - strand, within SM_b20324 at 327.301 kb on - strand, within SM_b20324 at 327.301 kb on - strand, within SM_b20324 at 327.323 kb on - strand, within SM_b20324 at 327.324 kb on - strand, within SM_b20324 at 327.570 kb on - strand at 327.646 kb on - strand at 327.756 kb on + strand at 327.756 kb on + strand at 328.118 kb on - strand at 328.118 kb on - strand at 328.118 kb on - strand at 328.185 kb on - strand at 328.500 kb on + strand, within SM_b20325 at 328.500 kb on + strand, within SM_b20325 at 328.501 kb on - strand, within SM_b20325 at 328.501 kb on - strand, within SM_b20325 at 328.549 kb on - strand, within SM_b20325 at 328.549 kb on - strand, within SM_b20325 at 328.549 kb on - strand, within SM_b20325 at 328.669 kb on - strand, within SM_b20325 at 328.833 kb on + strand, within SM_b20325 at 328.889 kb on + strand, within SM_b20325 at 328.890 kb on - strand, within SM_b20325 at 328.900 kb on - strand, within SM_b20325 at 328.905 kb on + strand, within SM_b20325 at 328.937 kb on - strand, within SM_b20325 at 329.032 kb on - strand, within SM_b20325 at 329.073 kb on + strand, within SM_b20325 at 329.446 kb on - strand at 329.619 kb on + strand, within SM_b20326 at 329.619 kb on + strand, within SM_b20326 at 329.619 kb on + strand, within SM_b20326 at 329.619 kb on + strand, within SM_b20326 at 329.686 kb on - strand, within SM_b20326 at 329.777 kb on + strand, within SM_b20326 at 329.777 kb on + strand, within SM_b20326 at 330.123 kb on + strand, within SM_b20326 at 330.123 kb on + strand, within SM_b20326 at 330.258 kb on + strand, within SM_b20326 at 330.259 kb on - strand, within SM_b20326
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 327,105 - SM_b20324 0.49 -1.3 327,105 - SM_b20324 0.49 -0.7 327,105 - SM_b20324 0.49 -0.6 327,301 - SM_b20324 0.69 -0.9 327,301 - SM_b20324 0.69 -1.0 327,323 - SM_b20324 0.71 -0.6 327,324 - SM_b20324 0.71 -0.8 327,570 - -1.1 327,646 - +0.7 327,756 + -0.7 327,756 + -0.9 328,118 - +0.0 328,118 - +0.5 328,118 - -0.0 328,185 - +1.1 328,500 + SM_b20325 0.32 +0.4 328,500 + SM_b20325 0.32 -0.1 328,501 - SM_b20325 0.32 -0.1 328,501 - SM_b20325 0.32 -0.1 328,549 - SM_b20325 0.35 -0.3 328,549 - SM_b20325 0.35 +1.2 328,549 - SM_b20325 0.35 +0.0 328,669 - SM_b20325 0.45 +0.2 328,833 + SM_b20325 0.58 -0.5 328,889 + SM_b20325 0.62 +0.1 328,890 - SM_b20325 0.62 +0.0 328,900 - SM_b20325 0.63 +0.6 328,905 + SM_b20325 0.63 -0.4 328,937 - SM_b20325 0.66 +0.4 329,032 - SM_b20325 0.73 +1.7 329,073 + SM_b20325 0.77 -0.2 329,446 - +0.6 329,619 + SM_b20326 0.16 -0.3 329,619 + SM_b20326 0.16 -0.2 329,619 + SM_b20326 0.16 -0.7 329,619 + SM_b20326 0.16 -0.7 329,686 - SM_b20326 0.23 +0.3 329,777 + SM_b20326 0.32 +0.2 329,777 + SM_b20326 0.32 +0.1 330,123 + SM_b20326 0.67 +1.2 330,123 + SM_b20326 0.67 +0.6 330,258 + SM_b20326 0.81 -0.9 330,259 - SM_b20326 0.81 -0.2
Or see this region's nucleotide sequence