Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20322 and SM_b20323 are separated by 87 nucleotides SM_b20323 and SM_b20324 are separated by 21 nucleotides SM_b20324 and SM_b20325 are separated by 478 nucleotides
SM_b20322: SM_b20322 - TRAP-type small permease component, at 325,229 to 325,834
_b20322
SM_b20323: SM_b20323 - transcriptional regulator, at 325,922 to 326,581
_b20323
SM_b20324: SM_b20324 - ThuR, regulatory protein for trehalosemaltose transport system, at 326,603 to 327,619
_b20324
SM_b20325: SM_b20325 - ABC transporter for D-trehalose/D-maltose/sucrose, substrate-binding component (ThuE) <small>(from data)</small>, at 328,098 to 329,369
_b20325
Position (kb) 326
327
328 Strain fitness (log2 ratio) -2
-1
0
1 at 325.651 kb on - strand, within SM_b20322 at 325.652 kb on + strand, within SM_b20322 at 325.652 kb on + strand, within SM_b20322 at 325.652 kb on + strand, within SM_b20322 at 325.911 kb on - strand at 326.409 kb on - strand, within SM_b20323 at 326.641 kb on + strand at 326.642 kb on - strand at 326.642 kb on - strand at 326.642 kb on - strand at 326.787 kb on + strand, within SM_b20324 at 326.787 kb on + strand, within SM_b20324 at 326.787 kb on + strand, within SM_b20324 at 326.807 kb on + strand, within SM_b20324 at 327.092 kb on - strand, within SM_b20324 at 327.105 kb on - strand, within SM_b20324 at 327.105 kb on - strand, within SM_b20324 at 327.105 kb on - strand, within SM_b20324 at 327.301 kb on - strand, within SM_b20324 at 327.301 kb on - strand, within SM_b20324 at 327.323 kb on - strand, within SM_b20324 at 327.324 kb on - strand, within SM_b20324 at 327.570 kb on - strand at 327.646 kb on - strand at 327.756 kb on + strand at 327.756 kb on + strand at 328.118 kb on - strand at 328.118 kb on - strand at 328.118 kb on - strand at 328.185 kb on - strand at 328.500 kb on + strand, within SM_b20325 at 328.500 kb on + strand, within SM_b20325 at 328.501 kb on - strand, within SM_b20325 at 328.501 kb on - strand, within SM_b20325 at 328.549 kb on - strand, within SM_b20325 at 328.549 kb on - strand, within SM_b20325 at 328.549 kb on - strand, within SM_b20325
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 325,651 - SM_b20322 0.70 -0.2 325,652 + SM_b20322 0.70 -0.5 325,652 + SM_b20322 0.70 +0.2 325,652 + SM_b20322 0.70 -0.2 325,911 - -0.6 326,409 - SM_b20323 0.74 +0.3 326,641 + -0.4 326,642 - -1.6 326,642 - -2.1 326,642 - -1.2 326,787 + SM_b20324 0.18 -1.7 326,787 + SM_b20324 0.18 -1.9 326,787 + SM_b20324 0.18 -0.8 326,807 + SM_b20324 0.20 -1.6 327,092 - SM_b20324 0.48 -0.9 327,105 - SM_b20324 0.49 -1.3 327,105 - SM_b20324 0.49 -0.7 327,105 - SM_b20324 0.49 -0.6 327,301 - SM_b20324 0.69 -0.9 327,301 - SM_b20324 0.69 -1.0 327,323 - SM_b20324 0.71 -0.6 327,324 - SM_b20324 0.71 -0.8 327,570 - -1.1 327,646 - +0.7 327,756 + -0.7 327,756 + -0.9 328,118 - +0.0 328,118 - +0.5 328,118 - -0.0 328,185 - +1.1 328,500 + SM_b20325 0.32 +0.4 328,500 + SM_b20325 0.32 -0.1 328,501 - SM_b20325 0.32 -0.1 328,501 - SM_b20325 0.32 -0.1 328,549 - SM_b20325 0.35 -0.3 328,549 - SM_b20325 0.35 +1.2 328,549 - SM_b20325 0.35 +0.0
Or see this region's nucleotide sequence