Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20292 and SM_b20293 are separated by 311 nucleotides SM_b20293 and SM_b20294 are separated by 131 nucleotides SM_b20294 and SM_b20295 are separated by 28 nucleotides
SM_b20292: SM_b20292 - immunogenic protein, at 299,408 to 300,391
_b20292
SM_b20293: SM_b20293 - hypothetical protein, at 300,703 to 301,062
_b20293
SM_b20294: SM_b20294 - transcriptional regulator NanR, at 301,194 to 301,895
_b20294
SM_b20295: SM_b20295 - ABC transporter substrate-binding protein, at 301,924 to 302,895
_b20295
Position (kb)
300
301
302 Strain fitness (log2 ratio)
-1
0
1 at 299.770 kb on + strand, within SM_b20292 at 299.797 kb on - strand, within SM_b20292 at 300.008 kb on + strand, within SM_b20292 at 300.103 kb on - strand, within SM_b20292 at 300.258 kb on + strand, within SM_b20292 at 300.262 kb on - strand, within SM_b20292 at 300.374 kb on - strand at 300.374 kb on - strand at 300.394 kb on - strand at 300.394 kb on - strand at 300.440 kb on + strand at 300.441 kb on - strand at 300.528 kb on + strand at 300.528 kb on + strand at 300.529 kb on - strand at 300.560 kb on + strand at 300.560 kb on + strand at 300.561 kb on - strand at 300.586 kb on - strand at 300.713 kb on + strand at 300.714 kb on - strand at 300.718 kb on + strand at 300.752 kb on - strand, within SM_b20293 at 300.849 kb on + strand, within SM_b20293 at 301.060 kb on + strand at 301.061 kb on - strand at 301.061 kb on - strand at 301.273 kb on - strand, within SM_b20294 at 301.357 kb on - strand, within SM_b20294 at 301.871 kb on + strand at 301.872 kb on - strand at 301.872 kb on - strand at 301.876 kb on - strand at 301.907 kb on + strand at 302.022 kb on + strand, within SM_b20295
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 299,770 + SM_b20292 0.37 -0.2 299,797 - SM_b20292 0.40 +0.4 300,008 + SM_b20292 0.61 +0.2 300,103 - SM_b20292 0.71 +0.0 300,258 + SM_b20292 0.86 -0.2 300,262 - SM_b20292 0.87 +0.1 300,374 - -0.3 300,374 - +1.0 300,394 - +0.3 300,394 - -0.0 300,440 + +0.3 300,441 - +0.8 300,528 + -0.2 300,528 + -0.4 300,529 - +0.6 300,560 + +0.0 300,560 + -0.2 300,561 - +0.0 300,586 - +0.2 300,713 + +0.6 300,714 - +0.0 300,718 + -0.5 300,752 - SM_b20293 0.14 -0.3 300,849 + SM_b20293 0.41 -0.9 301,060 + -0.4 301,061 - -0.3 301,061 - -1.0 301,273 - SM_b20294 0.11 +0.5 301,357 - SM_b20294 0.23 +0.6 301,871 + +0.2 301,872 - -0.7 301,872 - -0.1 301,876 - +0.0 301,907 + +0.0 302,022 + SM_b20295 0.10 +0.4
Or see this region's nucleotide sequence