Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20245

Experiment: A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20244 and SM_b20245 overlap by 4 nucleotidesSM_b20245 and SM_b20246 are separated by 333 nucleotides SM_b20244: SM_b20244 - CDP-tyvelose-2-epimerase, at 248,740 to 249,861 _b20244 SM_b20245: SM_b20245 - UDP-glucose 4-epimerase, at 249,858 to 250,964 _b20245 SM_b20246: SM_b20246 - oxidoreductase, at 251,298 to 252,290 _b20246 Position (kb) 249 250 251Strain fitness (log2 ratio) -1 0 1 2at 248.880 kb on + strand, within SM_b20244at 249.119 kb on + strand, within SM_b20244at 249.120 kb on - strand, within SM_b20244at 249.120 kb on - strand, within SM_b20244at 249.120 kb on - strand, within SM_b20244at 249.207 kb on - strand, within SM_b20244at 249.262 kb on + strand, within SM_b20244at 249.263 kb on - strand, within SM_b20244at 249.269 kb on + strand, within SM_b20244at 249.270 kb on - strand, within SM_b20244at 249.270 kb on - strand, within SM_b20244at 249.270 kb on - strand, within SM_b20244at 249.270 kb on - strand, within SM_b20244at 249.300 kb on - strand, within SM_b20244at 249.306 kb on + strand, within SM_b20244at 249.371 kb on + strand, within SM_b20244at 249.416 kb on + strand, within SM_b20244at 249.416 kb on + strand, within SM_b20244at 250.140 kb on + strand, within SM_b20245at 250.140 kb on + strand, within SM_b20245at 250.141 kb on - strand, within SM_b20245at 250.141 kb on - strand, within SM_b20245at 250.141 kb on - strand, within SM_b20245at 250.141 kb on - strand, within SM_b20245at 250.141 kb on - strand, within SM_b20245at 250.143 kb on - strand, within SM_b20245at 250.143 kb on - strand, within SM_b20245at 250.143 kb on - strand, within SM_b20245at 250.305 kb on - strand, within SM_b20245at 250.307 kb on - strand, within SM_b20245at 250.307 kb on - strand, within SM_b20245at 250.389 kb on + strand, within SM_b20245at 250.389 kb on + strand, within SM_b20245at 250.391 kb on + strand, within SM_b20245at 250.391 kb on + strand, within SM_b20245at 250.392 kb on - strand, within SM_b20245at 250.414 kb on + strand, within SM_b20245at 250.415 kb on - strand, within SM_b20245at 250.415 kb on - strand, within SM_b20245at 250.430 kb on - strand, within SM_b20245at 250.571 kb on + strand, within SM_b20245at 250.571 kb on + strand, within SM_b20245at 250.571 kb on + strand, within SM_b20245at 250.572 kb on - strand, within SM_b20245at 250.580 kb on - strand, within SM_b20245at 250.580 kb on - strand, within SM_b20245at 250.580 kb on - strand, within SM_b20245at 250.794 kb on + strand, within SM_b20245at 250.794 kb on + strand, within SM_b20245at 250.794 kb on + strand, within SM_b20245at 250.795 kb on - strand, within SM_b20245at 250.888 kb on + strandat 250.888 kb on + strandat 250.888 kb on + strandat 250.888 kb on + strandat 250.889 kb on - strandat 250.889 kb on - strandat 250.889 kb on - strandat 250.889 kb on - strandat 250.953 kb on + strandat 250.953 kb on + strandat 250.964 kb on + strandat 250.964 kb on + strandat 250.965 kb on - strandat 250.994 kb on - strandat 251.102 kb on - strandat 251.312 kb on - strandat 251.312 kb on - strandat 251.371 kb on + strandat 251.452 kb on + strand, within SM_b20246at 251.592 kb on + strand, within SM_b20246at 251.593 kb on - strand, within SM_b20246at 251.601 kb on + strand, within SM_b20246at 251.602 kb on - strand, within SM_b20246at 251.813 kb on - strand, within SM_b20246

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.02 mg/ml
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248,880 + SM_b20244 0.12 -0.8
249,119 + SM_b20244 0.34 -0.6
249,120 - SM_b20244 0.34 +0.1
249,120 - SM_b20244 0.34 -0.2
249,120 - SM_b20244 0.34 -0.8
249,207 - SM_b20244 0.42 +0.1
249,262 + SM_b20244 0.47 -0.4
249,263 - SM_b20244 0.47 +0.1
249,269 + SM_b20244 0.47 +0.1
249,270 - SM_b20244 0.47 -0.2
249,270 - SM_b20244 0.47 -1.3
249,270 - SM_b20244 0.47 -0.2
249,270 - SM_b20244 0.47 -0.6
249,300 - SM_b20244 0.50 -0.3
249,306 + SM_b20244 0.50 -0.2
249,371 + SM_b20244 0.56 -0.1
249,416 + SM_b20244 0.60 +1.0
249,416 + SM_b20244 0.60 +0.7
250,140 + SM_b20245 0.25 -0.0
250,140 + SM_b20245 0.25 -1.0
250,141 - SM_b20245 0.26 -0.9
250,141 - SM_b20245 0.26 -0.4
250,141 - SM_b20245 0.26 -1.4
250,141 - SM_b20245 0.26 -0.3
250,141 - SM_b20245 0.26 -0.4
250,143 - SM_b20245 0.26 -0.3
250,143 - SM_b20245 0.26 +0.2
250,143 - SM_b20245 0.26 +0.4
250,305 - SM_b20245 0.40 +0.1
250,307 - SM_b20245 0.41 +0.4
250,307 - SM_b20245 0.41 +1.9
250,389 + SM_b20245 0.48 -0.4
250,389 + SM_b20245 0.48 -0.0
250,391 + SM_b20245 0.48 +0.2
250,391 + SM_b20245 0.48 +0.5
250,392 - SM_b20245 0.48 -1.3
250,414 + SM_b20245 0.50 +0.1
250,415 - SM_b20245 0.50 +0.3
250,415 - SM_b20245 0.50 -0.2
250,430 - SM_b20245 0.52 -0.5
250,571 + SM_b20245 0.64 -0.6
250,571 + SM_b20245 0.64 -0.0
250,571 + SM_b20245 0.64 +0.0
250,572 - SM_b20245 0.64 -0.6
250,580 - SM_b20245 0.65 +0.3
250,580 - SM_b20245 0.65 -0.3
250,580 - SM_b20245 0.65 -0.2
250,794 + SM_b20245 0.85 -0.3
250,794 + SM_b20245 0.85 +0.4
250,794 + SM_b20245 0.85 -0.6
250,795 - SM_b20245 0.85 +0.1
250,888 + -0.2
250,888 + -0.2
250,888 + +0.0
250,888 + +0.7
250,889 - -0.8
250,889 - -0.9
250,889 - +0.0
250,889 - +0.1
250,953 + -1.1
250,953 + -0.1
250,964 + -0.6
250,964 + -0.0
250,965 - -0.1
250,994 - +0.4
251,102 - -0.5
251,312 - +0.2
251,312 - -0.1
251,371 + -1.2
251,452 + SM_b20246 0.16 +0.6
251,592 + SM_b20246 0.30 -0.1
251,593 - SM_b20246 0.30 -0.5
251,601 + SM_b20246 0.31 +0.8
251,602 - SM_b20246 0.31 -0.3
251,813 - SM_b20246 0.52 -0.6

Or see this region's nucleotide sequence