Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20154 and SM_b20155 are separated by 510 nucleotides SM_b20155 and SM_b20156 overlap by 1 nucleotides
SM_b20154: SM_b20154 - transcriptional regulator, at 170,752 to 171,738
_b20154
SM_b20155: SM_b20155 - ABC transporter permease, at 172,249 to 174,099
_b20155
SM_b20156: SM_b20156 - ABC transporter ATP-binding protein, at 174,099 to 175,232
_b20156
Position (kb) 172
173
174
175 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 171.270 kb on + strand, within SM_b20154 at 171.416 kb on - strand, within SM_b20154 at 171.416 kb on - strand, within SM_b20154 at 171.616 kb on + strand, within SM_b20154 at 171.616 kb on + strand, within SM_b20154 at 171.616 kb on + strand, within SM_b20154 at 171.617 kb on - strand, within SM_b20154 at 171.770 kb on - strand at 172.004 kb on + strand at 172.005 kb on - strand at 172.163 kb on + strand at 172.163 kb on + strand at 172.163 kb on + strand at 172.164 kb on - strand at 172.223 kb on - strand at 172.223 kb on - strand at 172.223 kb on - strand at 172.223 kb on - strand at 172.229 kb on - strand at 172.229 kb on - strand at 172.248 kb on - strand at 172.399 kb on + strand at 172.400 kb on - strand at 172.504 kb on + strand, within SM_b20155 at 172.634 kb on + strand, within SM_b20155 at 172.635 kb on - strand, within SM_b20155 at 172.691 kb on - strand, within SM_b20155 at 172.691 kb on - strand, within SM_b20155 at 172.747 kb on - strand, within SM_b20155 at 173.044 kb on + strand, within SM_b20155 at 173.044 kb on + strand, within SM_b20155 at 173.044 kb on + strand, within SM_b20155 at 173.045 kb on - strand, within SM_b20155 at 173.045 kb on - strand, within SM_b20155 at 173.157 kb on - strand, within SM_b20155 at 173.395 kb on + strand, within SM_b20155 at 173.507 kb on + strand, within SM_b20155 at 173.539 kb on + strand, within SM_b20155 at 173.605 kb on + strand, within SM_b20155 at 173.606 kb on - strand, within SM_b20155 at 173.639 kb on - strand, within SM_b20155 at 173.639 kb on - strand, within SM_b20155 at 173.639 kb on - strand, within SM_b20155 at 173.684 kb on - strand, within SM_b20155 at 173.915 kb on + strand at 173.915 kb on + strand at 173.915 kb on + strand at 173.959 kb on + strand at 173.960 kb on - strand at 173.980 kb on + strand at 173.981 kb on - strand at 174.035 kb on - strand at 174.136 kb on - strand at 174.136 kb on - strand at 174.136 kb on - strand at 174.372 kb on + strand, within SM_b20156 at 174.372 kb on + strand, within SM_b20156 at 174.373 kb on - strand, within SM_b20156 at 174.373 kb on - strand, within SM_b20156 at 174.373 kb on - strand, within SM_b20156 at 174.373 kb on - strand, within SM_b20156 at 174.373 kb on - strand, within SM_b20156 at 174.658 kb on + strand, within SM_b20156 at 174.659 kb on - strand, within SM_b20156 at 174.662 kb on + strand, within SM_b20156 at 174.662 kb on + strand, within SM_b20156 at 174.663 kb on - strand, within SM_b20156 at 174.663 kb on - strand, within SM_b20156 at 174.666 kb on + strand, within SM_b20156 at 174.786 kb on + strand, within SM_b20156 at 174.786 kb on + strand, within SM_b20156 at 174.787 kb on - strand, within SM_b20156 at 174.787 kb on - strand, within SM_b20156 at 174.787 kb on - strand, within SM_b20156 at 174.844 kb on + strand at 174.844 kb on + strand, within SM_b20156 at 174.844 kb on + strand, within SM_b20156 at 174.845 kb on - strand, within SM_b20156 at 174.845 kb on - strand, within SM_b20156 at 174.845 kb on - strand, within SM_b20156 at 174.845 kb on - strand, within SM_b20156 at 174.898 kb on - strand, within SM_b20156 at 174.966 kb on + strand, within SM_b20156
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 171,270 + SM_b20154 0.52 +0.9 171,416 - SM_b20154 0.67 +0.2 171,416 - SM_b20154 0.67 +0.2 171,616 + SM_b20154 0.88 +0.3 171,616 + SM_b20154 0.88 +0.2 171,616 + SM_b20154 0.88 -0.6 171,617 - SM_b20154 0.88 +1.0 171,770 - -0.5 172,004 + -0.2 172,005 - +0.5 172,163 + -0.6 172,163 + +1.1 172,163 + -0.0 172,164 - +0.1 172,223 - -0.1 172,223 - -0.1 172,223 - -0.5 172,223 - -0.3 172,229 - +0.4 172,229 - +1.2 172,248 - +0.1 172,399 + -0.5 172,400 - +0.2 172,504 + SM_b20155 0.14 -0.7 172,634 + SM_b20155 0.21 -1.0 172,635 - SM_b20155 0.21 +1.4 172,691 - SM_b20155 0.24 +0.5 172,691 - SM_b20155 0.24 -0.4 172,747 - SM_b20155 0.27 +0.4 173,044 + SM_b20155 0.43 -0.4 173,044 + SM_b20155 0.43 -0.3 173,044 + SM_b20155 0.43 -0.1 173,045 - SM_b20155 0.43 -0.4 173,045 - SM_b20155 0.43 -0.0 173,157 - SM_b20155 0.49 -1.1 173,395 + SM_b20155 0.62 -0.4 173,507 + SM_b20155 0.68 -2.0 173,539 + SM_b20155 0.70 -1.1 173,605 + SM_b20155 0.73 -0.1 173,606 - SM_b20155 0.73 -0.8 173,639 - SM_b20155 0.75 -0.8 173,639 - SM_b20155 0.75 +0.2 173,639 - SM_b20155 0.75 +0.0 173,684 - SM_b20155 0.78 -0.3 173,915 + +0.2 173,915 + -0.0 173,915 + -0.6 173,959 + +0.4 173,960 - -0.1 173,980 + +0.0 173,981 - +0.2 174,035 - +0.2 174,136 - +0.5 174,136 - -0.7 174,136 - +0.1 174,372 + SM_b20156 0.24 +1.7 174,372 + SM_b20156 0.24 +2.8 174,373 - SM_b20156 0.24 -0.2 174,373 - SM_b20156 0.24 +0.0 174,373 - SM_b20156 0.24 -0.1 174,373 - SM_b20156 0.24 +2.2 174,373 - SM_b20156 0.24 +1.2 174,658 + SM_b20156 0.49 +1.3 174,659 - SM_b20156 0.49 -0.2 174,662 + SM_b20156 0.50 -0.4 174,662 + SM_b20156 0.50 -1.1 174,663 - SM_b20156 0.50 -0.3 174,663 - SM_b20156 0.50 +0.2 174,666 + SM_b20156 0.50 +0.1 174,786 + SM_b20156 0.61 -1.6 174,786 + SM_b20156 0.61 +0.5 174,787 - SM_b20156 0.61 +0.1 174,787 - SM_b20156 0.61 +0.4 174,787 - SM_b20156 0.61 +0.2 174,844 + -0.9 174,844 + SM_b20156 0.66 +0.3 174,844 + SM_b20156 0.66 -0.0 174,845 - SM_b20156 0.66 +0.2 174,845 - SM_b20156 0.66 -0.7 174,845 - SM_b20156 0.66 +0.3 174,845 - SM_b20156 0.66 -0.5 174,898 - SM_b20156 0.70 +0.7 174,966 + SM_b20156 0.76 -0.0
Or see this region's nucleotide sequence