Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20147 and SM_b20148 are separated by 224 nucleotides SM_b20148 and SM_b20149 are separated by 3 nucleotides SM_b20149 and SM_b20150 are separated by 317 nucleotides
SM_b20147: SM_b20147 - alcohol dehydrogenase, at 162,355 to 163,461
_b20147
SM_b20148: SM_b20148 - transcriptional regulator, at 163,686 to 164,387
_b20148
SM_b20149: SM_b20149 - hypothetical protein, at 164,391 to 165,422
_b20149
SM_b20150: SM_b20150 - inositol monophosphatase, at 165,740 to 166,579
_b20150
Position (kb) 164
165
166 Strain fitness (log2 ratio) -2
-1
0
1
2 at 163.459 kb on + strand at 163.627 kb on + strand at 163.628 kb on - strand at 163.687 kb on + strand at 163.906 kb on + strand, within SM_b20148 at 163.907 kb on - strand, within SM_b20148 at 164.092 kb on + strand, within SM_b20148 at 164.093 kb on - strand, within SM_b20148 at 164.093 kb on - strand, within SM_b20148 at 164.191 kb on + strand, within SM_b20148 at 164.220 kb on + strand, within SM_b20148 at 164.220 kb on + strand, within SM_b20148 at 164.220 kb on + strand, within SM_b20148 at 164.248 kb on - strand, within SM_b20148 at 164.393 kb on - strand at 164.409 kb on + strand at 164.410 kb on - strand at 164.471 kb on + strand at 164.471 kb on + strand at 164.472 kb on - strand at 164.472 kb on - strand at 164.472 kb on - strand at 164.472 kb on - strand at 164.472 kb on - strand at 164.473 kb on + strand at 164.474 kb on - strand at 164.583 kb on - strand, within SM_b20149 at 164.583 kb on - strand, within SM_b20149 at 164.834 kb on + strand, within SM_b20149 at 164.834 kb on + strand, within SM_b20149 at 164.835 kb on - strand, within SM_b20149 at 164.835 kb on - strand, within SM_b20149 at 165.348 kb on - strand at 165.918 kb on + strand, within SM_b20150 at 165.919 kb on - strand, within SM_b20150 at 165.919 kb on - strand, within SM_b20150 at 165.984 kb on + strand, within SM_b20150 at 165.985 kb on - strand, within SM_b20150 at 166.130 kb on + strand, within SM_b20150 at 166.360 kb on + strand, within SM_b20150
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 163,459 + +0.2 163,627 + +0.1 163,628 - -0.3 163,687 + -0.1 163,906 + SM_b20148 0.31 +0.9 163,907 - SM_b20148 0.31 -0.3 164,092 + SM_b20148 0.58 +0.2 164,093 - SM_b20148 0.58 -0.5 164,093 - SM_b20148 0.58 -0.3 164,191 + SM_b20148 0.72 -0.4 164,220 + SM_b20148 0.76 -1.0 164,220 + SM_b20148 0.76 -0.8 164,220 + SM_b20148 0.76 -0.7 164,248 - SM_b20148 0.80 -0.6 164,393 - -0.5 164,409 + +0.3 164,410 - -1.3 164,471 + -2.5 164,471 + -1.9 164,472 - +0.3 164,472 - -0.5 164,472 - -0.3 164,472 - -1.0 164,472 - +0.2 164,473 + -1.4 164,474 - +0.2 164,583 - SM_b20149 0.19 +0.9 164,583 - SM_b20149 0.19 -0.7 164,834 + SM_b20149 0.43 -0.9 164,834 + SM_b20149 0.43 -0.3 164,835 - SM_b20149 0.43 -0.2 164,835 - SM_b20149 0.43 -0.4 165,348 - +0.6 165,918 + SM_b20150 0.21 +0.2 165,919 - SM_b20150 0.21 +0.1 165,919 - SM_b20150 0.21 -1.4 165,984 + SM_b20150 0.29 +2.1 165,985 - SM_b20150 0.29 -0.4 166,130 + SM_b20150 0.46 +0.5 166,360 + SM_b20150 0.74 -1.1
Or see this region's nucleotide sequence