Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20138 and SM_b20139 are separated by 311 nucleotides SM_b20139 and SM_b20140 are separated by 19 nucleotides SM_b20140 and SM_b20141 overlap by 1 nucleotides
SM_b20138: SM_b20138 - hypothetical protein, at 152,176 to 153,102
_b20138
SM_b20139: SM_b20139 - hypothetical protein, at 153,414 to 153,908
_b20139
SM_b20140: SM_b20140 - dihydrodipicolinate synthase, at 153,928 to 154,809
_b20140
SM_b20141: SM_b20141 - oligopeptide ABC transporter ATP-binding protein, at 154,809 to 156,455
_b20141
Position (kb) 153
154
155 Strain fitness (log2 ratio) -2
-1
0
1 at 152.990 kb on + strand, within SM_b20138 at 152.991 kb on - strand, within SM_b20138 at 152.991 kb on - strand, within SM_b20138 at 152.991 kb on - strand, within SM_b20138 at 152.991 kb on - strand, within SM_b20138 at 152.993 kb on + strand, within SM_b20138 at 152.994 kb on - strand, within SM_b20138 at 152.994 kb on - strand, within SM_b20138 at 152.994 kb on - strand, within SM_b20138 at 153.087 kb on + strand at 153.258 kb on + strand at 153.268 kb on + strand at 153.268 kb on + strand at 153.271 kb on + strand at 153.272 kb on - strand at 153.290 kb on + strand at 153.290 kb on + strand at 153.291 kb on - strand at 153.587 kb on + strand, within SM_b20139 at 153.588 kb on - strand, within SM_b20139 at 153.588 kb on - strand, within SM_b20139 at 153.588 kb on - strand, within SM_b20139 at 153.698 kb on + strand, within SM_b20139 at 153.887 kb on + strand at 154.100 kb on + strand, within SM_b20140 at 154.101 kb on - strand, within SM_b20140 at 154.256 kb on + strand, within SM_b20140 at 154.296 kb on - strand, within SM_b20140 at 154.344 kb on + strand, within SM_b20140 at 154.415 kb on + strand, within SM_b20140 at 154.415 kb on + strand, within SM_b20140 at 154.415 kb on + strand, within SM_b20140 at 154.416 kb on - strand, within SM_b20140 at 154.421 kb on + strand, within SM_b20140 at 154.422 kb on - strand, within SM_b20140 at 154.422 kb on - strand, within SM_b20140 at 154.422 kb on - strand, within SM_b20140 at 154.698 kb on + strand, within SM_b20140 at 154.698 kb on + strand, within SM_b20140 at 154.699 kb on - strand, within SM_b20140 at 154.699 kb on - strand, within SM_b20140 at 154.699 kb on - strand, within SM_b20140 at 154.749 kb on - strand at 154.863 kb on + strand at 154.864 kb on - strand at 154.922 kb on + strand at 154.923 kb on - strand at 154.925 kb on - strand at 154.940 kb on + strand at 155.002 kb on + strand, within SM_b20141 at 155.341 kb on + strand, within SM_b20141 at 155.413 kb on + strand, within SM_b20141 at 155.413 kb on + strand, within SM_b20141 at 155.414 kb on - strand, within SM_b20141 at 155.603 kb on - strand, within SM_b20141 at 155.704 kb on + strand, within SM_b20141 at 155.705 kb on - strand, within SM_b20141 at 155.726 kb on - strand, within SM_b20141
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 152,990 + SM_b20138 0.88 -0.5 152,991 - SM_b20138 0.88 +0.4 152,991 - SM_b20138 0.88 +0.7 152,991 - SM_b20138 0.88 -0.4 152,991 - SM_b20138 0.88 -0.1 152,993 + SM_b20138 0.88 -0.5 152,994 - SM_b20138 0.88 +0.4 152,994 - SM_b20138 0.88 -0.1 152,994 - SM_b20138 0.88 -0.3 153,087 + +0.1 153,258 + +0.2 153,268 + -0.1 153,268 + -0.1 153,271 + -0.0 153,272 - -0.5 153,290 + +0.3 153,290 + -0.6 153,291 - +0.1 153,587 + SM_b20139 0.35 +0.5 153,588 - SM_b20139 0.35 +1.1 153,588 - SM_b20139 0.35 +0.1 153,588 - SM_b20139 0.35 -0.2 153,698 + SM_b20139 0.57 +0.2 153,887 + +0.1 154,100 + SM_b20140 0.20 -0.2 154,101 - SM_b20140 0.20 +0.4 154,256 + SM_b20140 0.37 -0.4 154,296 - SM_b20140 0.42 +0.0 154,344 + SM_b20140 0.47 -0.1 154,415 + SM_b20140 0.55 -0.2 154,415 + SM_b20140 0.55 +0.0 154,415 + SM_b20140 0.55 +0.0 154,416 - SM_b20140 0.55 +0.5 154,421 + SM_b20140 0.56 -0.1 154,422 - SM_b20140 0.56 +0.1 154,422 - SM_b20140 0.56 +1.5 154,422 - SM_b20140 0.56 +1.1 154,698 + SM_b20140 0.87 +0.2 154,698 + SM_b20140 0.87 -0.8 154,699 - SM_b20140 0.87 -0.8 154,699 - SM_b20140 0.87 +0.2 154,699 - SM_b20140 0.87 +0.0 154,749 - +0.3 154,863 + +0.2 154,864 - +0.2 154,922 + -0.7 154,923 - +0.2 154,925 - -0.2 154,940 + +0.2 155,002 + SM_b20141 0.12 +0.2 155,341 + SM_b20141 0.32 +0.7 155,413 + SM_b20141 0.37 +1.2 155,413 + SM_b20141 0.37 -0.1 155,414 - SM_b20141 0.37 -0.1 155,603 - SM_b20141 0.48 -0.5 155,704 + SM_b20141 0.54 +1.3 155,705 - SM_b20141 0.54 -0.5 155,726 - SM_b20141 0.56 -2.0
Or see this region's nucleotide sequence