Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20130 and SM_b20131 overlap by 4 nucleotides SM_b20131 and SM_b20132 overlap by 4 nucleotides SM_b20132 and SM_b20133 overlap by 1 nucleotides
SM_b20130: SM_b20130 - dehydrogenase, at 142,635 to 143,498
_b20130
SM_b20131: SM_b20131 - oxidoreductase, at 143,495 to 143,980
_b20131
SM_b20132: SM_b20132 - dehydrogenase, at 143,977 to 146,295
_b20132
SM_b20133: SM_b20133 - hypothetical protein, at 146,295 to 147,344
_b20133
Position (kb) 143
144
145
146
147 Strain fitness (log2 ratio) -2
-1
0
1
2 at 143.046 kb on + strand, within SM_b20130 at 143.140 kb on + strand, within SM_b20130 at 143.578 kb on - strand, within SM_b20131 at 143.897 kb on - strand, within SM_b20131 at 143.916 kb on - strand, within SM_b20131 at 143.916 kb on - strand, within SM_b20131 at 143.916 kb on - strand, within SM_b20131 at 143.916 kb on - strand, within SM_b20131 at 143.977 kb on - strand at 143.986 kb on + strand at 143.986 kb on + strand at 143.986 kb on + strand at 143.986 kb on + strand at 143.987 kb on - strand at 143.987 kb on - strand at 144.088 kb on + strand at 144.088 kb on + strand at 144.088 kb on + strand at 144.292 kb on + strand, within SM_b20132 at 144.292 kb on + strand, within SM_b20132 at 144.293 kb on - strand, within SM_b20132 at 144.293 kb on - strand, within SM_b20132 at 144.317 kb on - strand, within SM_b20132 at 144.398 kb on - strand, within SM_b20132 at 144.566 kb on - strand, within SM_b20132 at 144.592 kb on + strand, within SM_b20132 at 144.592 kb on + strand, within SM_b20132 at 144.593 kb on - strand, within SM_b20132 at 144.595 kb on - strand, within SM_b20132 at 144.595 kb on - strand, within SM_b20132 at 144.890 kb on + strand, within SM_b20132 at 144.890 kb on + strand, within SM_b20132 at 144.891 kb on - strand, within SM_b20132 at 144.891 kb on - strand, within SM_b20132 at 145.063 kb on + strand, within SM_b20132 at 145.063 kb on + strand, within SM_b20132 at 145.063 kb on + strand, within SM_b20132 at 145.065 kb on + strand, within SM_b20132 at 145.117 kb on + strand at 145.120 kb on + strand, within SM_b20132 at 145.476 kb on + strand, within SM_b20132 at 145.571 kb on + strand, within SM_b20132 at 145.813 kb on + strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.832 kb on - strand, within SM_b20132 at 146.005 kb on + strand, within SM_b20132 at 146.019 kb on + strand, within SM_b20132 at 146.056 kb on + strand, within SM_b20132 at 146.056 kb on + strand, within SM_b20132 at 146.056 kb on + strand, within SM_b20132 at 146.057 kb on - strand, within SM_b20132 at 146.200 kb on + strand at 146.201 kb on - strand at 146.386 kb on + strand at 146.386 kb on + strand at 146.387 kb on - strand at 146.387 kb on - strand at 146.487 kb on + strand, within SM_b20133 at 146.488 kb on - strand, within SM_b20133 at 146.947 kb on - strand, within SM_b20133 at 147.148 kb on + strand, within SM_b20133 at 147.149 kb on - strand, within SM_b20133 at 147.149 kb on - strand, within SM_b20133 at 147.151 kb on + strand, within SM_b20133 at 147.152 kb on - strand, within SM_b20133 at 147.152 kb on - strand, within SM_b20133 at 147.248 kb on + strand at 147.248 kb on + strand at 147.248 kb on + strand at 147.248 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 143,046 + SM_b20130 0.48 +0.1 143,140 + SM_b20130 0.58 -0.6 143,578 - SM_b20131 0.17 +0.4 143,897 - SM_b20131 0.83 -0.4 143,916 - SM_b20131 0.87 +2.2 143,916 - SM_b20131 0.87 -0.0 143,916 - SM_b20131 0.87 -1.5 143,916 - SM_b20131 0.87 +0.5 143,977 - +0.0 143,986 + -0.2 143,986 + +0.5 143,986 + +0.1 143,986 + -0.3 143,987 - -1.5 143,987 - -0.1 144,088 + +0.3 144,088 + +0.5 144,088 + -0.5 144,292 + SM_b20132 0.14 -0.4 144,292 + SM_b20132 0.14 -0.0 144,293 - SM_b20132 0.14 -0.6 144,293 - SM_b20132 0.14 -0.3 144,317 - SM_b20132 0.15 +0.0 144,398 - SM_b20132 0.18 +0.5 144,566 - SM_b20132 0.25 -2.1 144,592 + SM_b20132 0.27 -1.0 144,592 + SM_b20132 0.27 -0.1 144,593 - SM_b20132 0.27 -0.4 144,595 - SM_b20132 0.27 -0.3 144,595 - SM_b20132 0.27 -0.2 144,890 + SM_b20132 0.39 -0.8 144,890 + SM_b20132 0.39 -1.4 144,891 - SM_b20132 0.39 -0.5 144,891 - SM_b20132 0.39 -0.2 145,063 + SM_b20132 0.47 -0.1 145,063 + SM_b20132 0.47 +0.2 145,063 + SM_b20132 0.47 +0.4 145,065 + SM_b20132 0.47 +0.4 145,117 + +0.0 145,120 + SM_b20132 0.49 -1.4 145,476 + SM_b20132 0.65 -0.9 145,571 + SM_b20132 0.69 -0.2 145,813 + SM_b20132 0.79 -0.0 145,814 - SM_b20132 0.79 +0.0 145,814 - SM_b20132 0.79 -0.5 145,814 - SM_b20132 0.79 +0.0 145,814 - SM_b20132 0.79 +0.1 145,814 - SM_b20132 0.79 +0.2 145,814 - SM_b20132 0.79 +0.3 145,814 - SM_b20132 0.79 -0.0 145,814 - SM_b20132 0.79 -0.8 145,832 - SM_b20132 0.80 +0.4 146,005 + SM_b20132 0.87 -0.2 146,019 + SM_b20132 0.88 +0.1 146,056 + SM_b20132 0.90 +0.0 146,056 + SM_b20132 0.90 -1.7 146,056 + SM_b20132 0.90 -2.4 146,057 - SM_b20132 0.90 -0.1 146,200 + -0.1 146,201 - -1.5 146,386 + +1.7 146,386 + -0.5 146,387 - -0.2 146,387 - -0.1 146,487 + SM_b20133 0.18 +0.5 146,488 - SM_b20133 0.18 -0.8 146,947 - SM_b20133 0.62 -0.2 147,148 + SM_b20133 0.81 +0.8 147,149 - SM_b20133 0.81 +0.8 147,149 - SM_b20133 0.81 -0.2 147,151 + SM_b20133 0.82 +0.4 147,152 - SM_b20133 0.82 +0.5 147,152 - SM_b20133 0.82 -0.3 147,248 + -0.6 147,248 + +0.4 147,248 + -0.4 147,248 + -0.2
Or see this region's nucleotide sequence