Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21570 and RR42_RS21575 are separated by 125 nucleotides RR42_RS21575 and RR42_RS21580 are separated by 34 nucleotides RR42_RS21580 and RR42_RS21585 are separated by 45 nucleotides
RR42_RS21570: RR42_RS21570 - membrane protein, at 164,956 to 166,104
_RS21570
RR42_RS21575: RR42_RS21575 - peptidase E, at 166,230 to 166,985
_RS21575
RR42_RS21580: RR42_RS21580 - cysteine desulfurase, at 167,020 to 168,204
_RS21580
RR42_RS21585: RR42_RS21585 - membrane protein, at 168,250 to 169,857
_RS21585
Position (kb) 167
168
169 Strain fitness (log2 ratio) -2
-1
0
1
2 at 166.128 kb on - strand at 166.128 kb on - strand at 166.128 kb on - strand at 166.318 kb on - strand, within RR42_RS21575 at 166.631 kb on - strand, within RR42_RS21575 at 166.831 kb on + strand, within RR42_RS21575 at 166.831 kb on + strand, within RR42_RS21575 at 166.831 kb on + strand, within RR42_RS21575 at 166.831 kb on + strand, within RR42_RS21575 at 166.831 kb on + strand, within RR42_RS21575 at 166.831 kb on + strand, within RR42_RS21575 at 166.831 kb on + strand, within RR42_RS21575 at 166.832 kb on - strand, within RR42_RS21575 at 166.832 kb on - strand, within RR42_RS21575 at 166.832 kb on - strand, within RR42_RS21575 at 166.832 kb on - strand, within RR42_RS21575 at 166.832 kb on - strand, within RR42_RS21575 at 166.934 kb on - strand at 166.998 kb on + strand at 167.073 kb on + strand at 167.074 kb on - strand at 167.074 kb on - strand at 167.081 kb on + strand at 167.082 kb on - strand at 167.117 kb on + strand at 167.264 kb on + strand, within RR42_RS21580 at 167.468 kb on + strand, within RR42_RS21580 at 167.468 kb on + strand, within RR42_RS21580 at 167.469 kb on - strand, within RR42_RS21580 at 167.469 kb on - strand, within RR42_RS21580 at 167.531 kb on + strand, within RR42_RS21580 at 167.943 kb on + strand, within RR42_RS21580 at 167.943 kb on + strand, within RR42_RS21580 at 167.943 kb on + strand, within RR42_RS21580 at 167.944 kb on - strand, within RR42_RS21580 at 167.944 kb on - strand, within RR42_RS21580 at 168.035 kb on + strand, within RR42_RS21580 at 168.035 kb on + strand, within RR42_RS21580 at 168.036 kb on - strand, within RR42_RS21580 at 168.036 kb on - strand, within RR42_RS21580 at 168.036 kb on - strand, within RR42_RS21580 at 168.062 kb on + strand, within RR42_RS21580 at 168.152 kb on + strand at 168.153 kb on - strand at 168.153 kb on - strand at 168.153 kb on - strand at 168.153 kb on - strand at 168.251 kb on + strand at 168.251 kb on + strand at 168.251 kb on + strand at 168.251 kb on + strand at 168.251 kb on + strand at 168.251 kb on + strand at 168.394 kb on + strand at 168.561 kb on - strand, within RR42_RS21585 at 168.722 kb on + strand, within RR42_RS21585 at 168.740 kb on + strand, within RR42_RS21585 at 168.915 kb on - strand, within RR42_RS21585 at 168.932 kb on + strand, within RR42_RS21585 at 168.966 kb on + strand, within RR42_RS21585 at 168.967 kb on - strand, within RR42_RS21585 at 169.017 kb on - strand, within RR42_RS21585 at 169.173 kb on + strand, within RR42_RS21585 at 169.175 kb on + strand, within RR42_RS21585 at 169.176 kb on - strand, within RR42_RS21585 at 169.176 kb on - strand, within RR42_RS21585 at 169.176 kb on - strand, within RR42_RS21585 at 169.176 kb on - strand, within RR42_RS21585 at 169.176 kb on - strand, within RR42_RS21585
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 166,128 - +0.7 166,128 - -0.3 166,128 - +0.4 166,318 - RR42_RS21575 0.12 +1.1 166,631 - RR42_RS21575 0.53 +0.5 166,831 + RR42_RS21575 0.79 -0.3 166,831 + RR42_RS21575 0.79 -0.2 166,831 + RR42_RS21575 0.79 +0.1 166,831 + RR42_RS21575 0.79 -0.4 166,831 + RR42_RS21575 0.79 -1.3 166,831 + RR42_RS21575 0.79 -0.2 166,831 + RR42_RS21575 0.79 -0.7 166,832 - RR42_RS21575 0.80 -0.5 166,832 - RR42_RS21575 0.80 +0.2 166,832 - RR42_RS21575 0.80 -0.6 166,832 - RR42_RS21575 0.80 -0.1 166,832 - RR42_RS21575 0.80 +0.9 166,934 - +0.2 166,998 + +0.2 167,073 + +0.1 167,074 - +1.5 167,074 - +0.4 167,081 + -1.1 167,082 - +0.3 167,117 + -0.6 167,264 + RR42_RS21580 0.21 +0.3 167,468 + RR42_RS21580 0.38 -1.0 167,468 + RR42_RS21580 0.38 +0.9 167,469 - RR42_RS21580 0.38 +0.1 167,469 - RR42_RS21580 0.38 -0.3 167,531 + RR42_RS21580 0.43 +0.0 167,943 + RR42_RS21580 0.78 +1.2 167,943 + RR42_RS21580 0.78 -0.6 167,943 + RR42_RS21580 0.78 -0.1 167,944 - RR42_RS21580 0.78 -0.0 167,944 - RR42_RS21580 0.78 +0.9 168,035 + RR42_RS21580 0.86 -0.7 168,035 + RR42_RS21580 0.86 +0.0 168,036 - RR42_RS21580 0.86 -0.8 168,036 - RR42_RS21580 0.86 +1.1 168,036 - RR42_RS21580 0.86 -0.2 168,062 + RR42_RS21580 0.88 +0.1 168,152 + +0.5 168,153 - +2.1 168,153 - -1.1 168,153 - -2.2 168,153 - +0.5 168,251 + +0.0 168,251 + +0.5 168,251 + -1.4 168,251 + -0.9 168,251 + -2.2 168,251 + +0.2 168,394 + -0.9 168,561 - RR42_RS21585 0.19 +1.8 168,722 + RR42_RS21585 0.29 +0.2 168,740 + RR42_RS21585 0.30 -0.3 168,915 - RR42_RS21585 0.41 -0.1 168,932 + RR42_RS21585 0.42 -0.2 168,966 + RR42_RS21585 0.45 -0.3 168,967 - RR42_RS21585 0.45 -0.0 169,017 - RR42_RS21585 0.48 -0.4 169,173 + RR42_RS21585 0.57 -0.6 169,175 + RR42_RS21585 0.58 +0.4 169,176 - RR42_RS21585 0.58 -0.2 169,176 - RR42_RS21585 0.58 -0.7 169,176 - RR42_RS21585 0.58 -0.6 169,176 - RR42_RS21585 0.58 +0.1 169,176 - RR42_RS21585 0.58 -0.1
Or see this region's nucleotide sequence