Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21545 and RR42_RS21550 are separated by 197 nucleotides RR42_RS21550 and RR42_RS21555 are separated by 259 nucleotides RR42_RS21555 and RR42_RS21560 are separated by 11 nucleotides RR42_RS21560 and RR42_RS21565 are separated by 120 nucleotides
RR42_RS21545: RR42_RS21545 - hypothetical protein, at 160,117 to 160,659
_RS21545
RR42_RS21550: RR42_RS21550 - hypothetical protein, at 160,857 to 161,270
_RS21550
RR42_RS21555: RR42_RS21555 - membrane protein, at 161,530 to 162,519
_RS21555
RR42_RS21560: RR42_RS21560 - hypothetical protein, at 162,531 to 163,229
_RS21560
RR42_RS21565: RR42_RS21565 - hypothetical protein, at 163,350 to 164,309
_RS21565
Position (kb) 161
162
163 Strain fitness (log2 ratio) -2
-1
0
1
2 at 160.571 kb on + strand, within RR42_RS21545 at 160.711 kb on + strand at 160.712 kb on - strand at 160.755 kb on + strand at 160.755 kb on + strand at 160.756 kb on - strand at 160.765 kb on - strand at 160.952 kb on + strand, within RR42_RS21550 at 160.980 kb on + strand, within RR42_RS21550 at 160.981 kb on - strand, within RR42_RS21550 at 160.981 kb on - strand, within RR42_RS21550 at 161.011 kb on - strand, within RR42_RS21550 at 161.011 kb on - strand, within RR42_RS21550 at 161.011 kb on - strand, within RR42_RS21550 at 161.012 kb on + strand, within RR42_RS21550 at 161.013 kb on - strand, within RR42_RS21550 at 161.013 kb on - strand, within RR42_RS21550 at 161.013 kb on - strand, within RR42_RS21550 at 161.409 kb on + strand at 161.445 kb on - strand at 161.445 kb on - strand at 161.452 kb on - strand at 161.452 kb on - strand at 161.452 kb on - strand at 161.452 kb on - strand at 161.452 kb on - strand at 161.489 kb on - strand at 161.513 kb on + strand at 161.514 kb on - strand at 161.514 kb on - strand at 161.734 kb on + strand, within RR42_RS21555 at 161.735 kb on - strand, within RR42_RS21555 at 161.831 kb on - strand, within RR42_RS21555 at 161.831 kb on - strand, within RR42_RS21555 at 161.944 kb on + strand, within RR42_RS21555 at 161.944 kb on + strand, within RR42_RS21555 at 162.043 kb on + strand, within RR42_RS21555 at 162.043 kb on + strand, within RR42_RS21555 at 162.043 kb on + strand, within RR42_RS21555 at 162.044 kb on - strand, within RR42_RS21555 at 162.044 kb on - strand, within RR42_RS21555 at 162.044 kb on - strand, within RR42_RS21555 at 162.044 kb on - strand, within RR42_RS21555 at 162.044 kb on - strand, within RR42_RS21555 at 162.278 kb on + strand, within RR42_RS21555 at 162.316 kb on + strand, within RR42_RS21555 at 162.338 kb on + strand, within RR42_RS21555 at 162.387 kb on + strand, within RR42_RS21555 at 162.548 kb on - strand at 162.580 kb on + strand at 162.580 kb on + strand at 162.580 kb on + strand at 162.580 kb on + strand at 162.580 kb on + strand at 162.581 kb on - strand at 162.581 kb on - strand at 162.581 kb on - strand at 162.581 kb on - strand at 162.581 kb on - strand at 162.616 kb on + strand, within RR42_RS21560 at 162.617 kb on - strand, within RR42_RS21560 at 162.678 kb on + strand, within RR42_RS21560 at 162.761 kb on + strand, within RR42_RS21560 at 162.871 kb on + strand, within RR42_RS21560 at 162.872 kb on - strand, within RR42_RS21560 at 163.240 kb on + strand at 163.278 kb on + strand at 163.278 kb on + strand at 163.278 kb on + strand at 163.279 kb on - strand at 163.279 kb on - strand at 163.279 kb on - strand at 163.279 kb on - strand at 163.393 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 160,571 + RR42_RS21545 0.84 +2.7 160,711 + +0.5 160,712 - +0.8 160,755 + -0.2 160,755 + +0.1 160,756 - +0.4 160,765 - +0.9 160,952 + RR42_RS21550 0.23 +0.4 160,980 + RR42_RS21550 0.30 +0.3 160,981 - RR42_RS21550 0.30 +0.4 160,981 - RR42_RS21550 0.30 -0.9 161,011 - RR42_RS21550 0.37 +0.4 161,011 - RR42_RS21550 0.37 +0.2 161,011 - RR42_RS21550 0.37 +0.0 161,012 + RR42_RS21550 0.37 +0.3 161,013 - RR42_RS21550 0.38 +0.1 161,013 - RR42_RS21550 0.38 +0.2 161,013 - RR42_RS21550 0.38 +0.6 161,409 + -1.4 161,445 - +0.1 161,445 - -1.1 161,452 - -0.2 161,452 - -0.6 161,452 - -1.1 161,452 - -0.5 161,452 - -1.4 161,489 - +0.8 161,513 + +0.1 161,514 - -0.6 161,514 - -0.2 161,734 + RR42_RS21555 0.21 +0.2 161,735 - RR42_RS21555 0.21 +0.6 161,831 - RR42_RS21555 0.30 +0.3 161,831 - RR42_RS21555 0.30 -0.4 161,944 + RR42_RS21555 0.42 +0.2 161,944 + RR42_RS21555 0.42 +0.0 162,043 + RR42_RS21555 0.52 -0.3 162,043 + RR42_RS21555 0.52 +0.5 162,043 + RR42_RS21555 0.52 +0.2 162,044 - RR42_RS21555 0.52 -0.1 162,044 - RR42_RS21555 0.52 -0.3 162,044 - RR42_RS21555 0.52 +0.5 162,044 - RR42_RS21555 0.52 -0.3 162,044 - RR42_RS21555 0.52 +0.6 162,278 + RR42_RS21555 0.76 -0.3 162,316 + RR42_RS21555 0.79 -0.3 162,338 + RR42_RS21555 0.82 +0.6 162,387 + RR42_RS21555 0.87 -1.4 162,548 - +0.1 162,580 + -0.0 162,580 + +0.1 162,580 + +0.4 162,580 + +0.5 162,580 + -0.2 162,581 - +0.3 162,581 - -1.4 162,581 - +0.4 162,581 - +0.3 162,581 - +0.0 162,616 + RR42_RS21560 0.12 -0.4 162,617 - RR42_RS21560 0.12 +0.0 162,678 + RR42_RS21560 0.21 -0.5 162,761 + RR42_RS21560 0.33 -0.4 162,871 + RR42_RS21560 0.49 +0.5 162,872 - RR42_RS21560 0.49 -1.1 163,240 + -0.0 163,278 + +1.6 163,278 + +0.3 163,278 + +0.4 163,279 - -0.4 163,279 - +1.4 163,279 - +0.5 163,279 - -2.1 163,393 + -0.1
Or see this region's nucleotide sequence