Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20395 and RR42_RS20400 are separated by 175 nucleotides RR42_RS20400 and RR42_RS20405 are separated by 47 nucleotides RR42_RS20405 and RR42_RS20410 are separated by 241 nucleotides
RR42_RS20395: RR42_RS20395 - membrane protein, at 4,417,130 to 4,418,098
_RS20395
RR42_RS20400: RR42_RS20400 - aldolase, at 4,418,274 to 4,419,038
_RS20400
RR42_RS20405: RR42_RS20405 - 2-dehydropantoate 2-reductase, at 4,419,086 to 4,420,069
_RS20405
RR42_RS20410: RR42_RS20410 - transporter, at 4,420,311 to 4,421,201
_RS20410
Position (kb) 4419
4420
4421 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4418.116 kb on + strand at 4418.192 kb on + strand at 4418.192 kb on + strand at 4418.192 kb on + strand at 4418.334 kb on + strand at 4418.373 kb on + strand, within RR42_RS20400 at 4418.373 kb on + strand, within RR42_RS20400 at 4418.374 kb on - strand, within RR42_RS20400 at 4418.374 kb on - strand, within RR42_RS20400 at 4418.671 kb on - strand, within RR42_RS20400 at 4418.671 kb on - strand, within RR42_RS20400 at 4418.701 kb on - strand, within RR42_RS20400 at 4418.701 kb on - strand, within RR42_RS20400 at 4418.701 kb on - strand, within RR42_RS20400 at 4418.720 kb on + strand, within RR42_RS20400 at 4418.720 kb on + strand, within RR42_RS20400 at 4418.803 kb on + strand, within RR42_RS20400 at 4418.879 kb on + strand, within RR42_RS20400 at 4418.879 kb on + strand, within RR42_RS20400 at 4418.880 kb on - strand, within RR42_RS20400 at 4419.057 kb on - strand at 4419.096 kb on + strand at 4419.096 kb on + strand at 4419.096 kb on + strand at 4419.097 kb on - strand at 4419.097 kb on - strand at 4419.282 kb on + strand, within RR42_RS20405 at 4419.283 kb on - strand, within RR42_RS20405 at 4419.283 kb on - strand, within RR42_RS20405 at 4419.283 kb on - strand, within RR42_RS20405 at 4419.286 kb on + strand, within RR42_RS20405 at 4419.286 kb on + strand, within RR42_RS20405 at 4419.533 kb on - strand, within RR42_RS20405 at 4419.718 kb on + strand, within RR42_RS20405 at 4419.718 kb on + strand, within RR42_RS20405 at 4419.719 kb on - strand, within RR42_RS20405 at 4420.064 kb on + strand at 4420.191 kb on - strand at 4420.443 kb on + strand, within RR42_RS20410 at 4420.477 kb on + strand, within RR42_RS20410 at 4420.478 kb on - strand, within RR42_RS20410 at 4420.509 kb on - strand, within RR42_RS20410 at 4420.509 kb on - strand, within RR42_RS20410 at 4420.630 kb on + strand, within RR42_RS20410 at 4420.631 kb on - strand, within RR42_RS20410 at 4420.863 kb on + strand at 4420.864 kb on - strand, within RR42_RS20410 at 4420.864 kb on - strand, within RR42_RS20410 at 4420.900 kb on + strand, within RR42_RS20410 at 4420.948 kb on + strand, within RR42_RS20410 at 4420.948 kb on + strand, within RR42_RS20410 at 4420.948 kb on + strand, within RR42_RS20410 at 4420.949 kb on - strand, within RR42_RS20410
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 4,418,116 + -0.2 4,418,192 + +0.1 4,418,192 + +0.1 4,418,192 + -1.1 4,418,334 + +0.8 4,418,373 + RR42_RS20400 0.13 -0.1 4,418,373 + RR42_RS20400 0.13 +1.5 4,418,374 - RR42_RS20400 0.13 +0.0 4,418,374 - RR42_RS20400 0.13 +1.6 4,418,671 - RR42_RS20400 0.52 +1.6 4,418,671 - RR42_RS20400 0.52 +1.0 4,418,701 - RR42_RS20400 0.56 +0.3 4,418,701 - RR42_RS20400 0.56 -0.8 4,418,701 - RR42_RS20400 0.56 -0.2 4,418,720 + RR42_RS20400 0.58 +1.6 4,418,720 + RR42_RS20400 0.58 +1.9 4,418,803 + RR42_RS20400 0.69 +0.1 4,418,879 + RR42_RS20400 0.79 -1.3 4,418,879 + RR42_RS20400 0.79 +0.9 4,418,880 - RR42_RS20400 0.79 -0.1 4,419,057 - -0.1 4,419,096 + -1.1 4,419,096 + +0.2 4,419,096 + +0.0 4,419,097 - +0.0 4,419,097 - +0.5 4,419,282 + RR42_RS20405 0.20 -0.1 4,419,283 - RR42_RS20405 0.20 -2.0 4,419,283 - RR42_RS20405 0.20 -0.6 4,419,283 - RR42_RS20405 0.20 -0.7 4,419,286 + RR42_RS20405 0.20 +1.7 4,419,286 + RR42_RS20405 0.20 -1.0 4,419,533 - RR42_RS20405 0.45 -1.1 4,419,718 + RR42_RS20405 0.64 +0.3 4,419,718 + RR42_RS20405 0.64 -1.0 4,419,719 - RR42_RS20405 0.64 -0.8 4,420,064 + +0.8 4,420,191 - +2.0 4,420,443 + RR42_RS20410 0.15 +0.6 4,420,477 + RR42_RS20410 0.19 -0.0 4,420,478 - RR42_RS20410 0.19 +0.4 4,420,509 - RR42_RS20410 0.22 -0.1 4,420,509 - RR42_RS20410 0.22 +0.0 4,420,630 + RR42_RS20410 0.36 -0.6 4,420,631 - RR42_RS20410 0.36 +0.1 4,420,863 + +0.0 4,420,864 - RR42_RS20410 0.62 -0.3 4,420,864 - RR42_RS20410 0.62 -1.8 4,420,900 + RR42_RS20410 0.66 -0.4 4,420,948 + RR42_RS20410 0.71 +0.4 4,420,948 + RR42_RS20410 0.71 +1.0 4,420,948 + RR42_RS20410 0.71 +0.4 4,420,949 - RR42_RS20410 0.72 -0.5
Or see this region's nucleotide sequence