Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15560

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS15555 and RR42_RS15560 are separated by 84 nucleotidesRR42_RS15560 and RR42_RS15565 are separated by 258 nucleotides RR42_RS15555: RR42_RS15555 - diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 3,359,502 to 3,360,620 _RS15555 RR42_RS15560: RR42_RS15560 - riboflavin synthase subunit alpha, at 3,360,705 to 3,361,334 _RS15560 RR42_RS15565: RR42_RS15565 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 3,361,593 to 3,362,705 _RS15565 Position (kb) 3360 3361 3362Strain fitness (log2 ratio) -1 0 1at 3360.668 kb on + strandat 3360.668 kb on + strandat 3360.669 kb on - strandat 3361.460 kb on + strandat 3361.465 kb on + strandat 3361.465 kb on + strandat 3361.743 kb on + strand, within RR42_RS15565at 3362.244 kb on + strand, within RR42_RS15565at 3362.244 kb on + strand, within RR42_RS15565at 3362.268 kb on + strand, within RR42_RS15565at 3362.268 kb on + strand, within RR42_RS15565at 3362.268 kb on + strand, within RR42_RS15565

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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3,360,668 + -0.9
3,360,668 + +0.4
3,360,669 - +0.2
3,361,460 + +0.7
3,361,465 + +0.2
3,361,465 + +0.7
3,361,743 + RR42_RS15565 0.13 +0.0
3,362,244 + RR42_RS15565 0.58 +0.1
3,362,244 + RR42_RS15565 0.58 -1.1
3,362,268 + RR42_RS15565 0.61 -0.6
3,362,268 + RR42_RS15565 0.61 -0.5
3,362,268 + RR42_RS15565 0.61 -0.8

Or see this region's nucleotide sequence