Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04285 and RR42_RS04290 are separated by 180 nucleotides RR42_RS04290 and RR42_RS04295 are separated by 29 nucleotides RR42_RS04295 and RR42_RS04300 are separated by 252 nucleotides RR42_RS04300 and RR42_RS04305 are separated by 95 nucleotides
RR42_RS04285: RR42_RS04285 - inorganic pyrophosphatase, at 953,239 to 953,766
_RS04285
RR42_RS04290: RR42_RS04290 - cytochrome B561, at 953,947 to 954,501
_RS04290
RR42_RS04295: RR42_RS04295 - hypothetical protein, at 954,531 to 955,790
_RS04295
RR42_RS04300: RR42_RS04300 - nitrogen regulatory protein P-II 1, at 956,043 to 956,381
_RS04300
RR42_RS04305: RR42_RS04305 - membrane protein, at 956,477 to 957,118
_RS04305
Position (kb) 954
955
956 Strain fitness (log2 ratio) -2
-1
0
1
2 at 953.764 kb on + strand at 953.764 kb on + strand at 953.765 kb on - strand at 953.886 kb on + strand at 953.900 kb on + strand at 953.939 kb on + strand at 953.939 kb on + strand at 953.955 kb on + strand at 953.955 kb on + strand at 953.955 kb on + strand at 953.986 kb on + strand at 954.020 kb on + strand, within RR42_RS04290 at 954.020 kb on + strand, within RR42_RS04290 at 954.021 kb on - strand, within RR42_RS04290 at 954.021 kb on - strand, within RR42_RS04290 at 954.043 kb on + strand, within RR42_RS04290 at 954.242 kb on + strand, within RR42_RS04290 at 954.242 kb on + strand, within RR42_RS04290 at 954.242 kb on + strand, within RR42_RS04290 at 954.243 kb on - strand, within RR42_RS04290 at 954.247 kb on + strand, within RR42_RS04290 at 954.247 kb on + strand, within RR42_RS04290 at 954.248 kb on - strand, within RR42_RS04290 at 954.257 kb on + strand, within RR42_RS04290 at 954.415 kb on + strand, within RR42_RS04290 at 954.415 kb on + strand, within RR42_RS04290 at 954.415 kb on + strand, within RR42_RS04290 at 954.415 kb on + strand, within RR42_RS04290 at 954.415 kb on + strand, within RR42_RS04290 at 954.415 kb on + strand, within RR42_RS04290 at 954.415 kb on + strand, within RR42_RS04290 at 954.416 kb on - strand, within RR42_RS04290 at 954.460 kb on + strand at 954.460 kb on + strand at 954.460 kb on + strand at 954.461 kb on - strand at 954.461 kb on - strand at 954.461 kb on - strand at 954.475 kb on - strand at 954.499 kb on + strand at 954.574 kb on + strand at 954.723 kb on - strand, within RR42_RS04295 at 954.760 kb on + strand, within RR42_RS04295 at 954.761 kb on - strand, within RR42_RS04295 at 954.763 kb on + strand, within RR42_RS04295 at 954.764 kb on - strand, within RR42_RS04295 at 954.764 kb on - strand, within RR42_RS04295 at 954.764 kb on - strand, within RR42_RS04295 at 954.764 kb on - strand, within RR42_RS04295 at 954.764 kb on - strand, within RR42_RS04295 at 954.812 kb on - strand, within RR42_RS04295 at 954.851 kb on - strand, within RR42_RS04295 at 954.851 kb on - strand, within RR42_RS04295 at 954.995 kb on - strand, within RR42_RS04295 at 955.385 kb on - strand, within RR42_RS04295 at 955.406 kb on - strand, within RR42_RS04295 at 955.406 kb on - strand, within RR42_RS04295 at 955.435 kb on + strand, within RR42_RS04295 at 955.435 kb on + strand, within RR42_RS04295 at 955.436 kb on - strand, within RR42_RS04295 at 955.436 kb on - strand, within RR42_RS04295 at 955.436 kb on - strand, within RR42_RS04295 at 955.436 kb on - strand, within RR42_RS04295 at 955.525 kb on + strand, within RR42_RS04295 at 955.688 kb on - strand at 955.863 kb on + strand at 955.881 kb on + strand at 955.882 kb on - strand at 955.899 kb on + strand at 956.003 kb on + strand at 956.027 kb on + strand at 956.027 kb on + strand at 956.027 kb on + strand at 956.027 kb on + strand at 956.028 kb on - strand at 956.029 kb on + strand at 956.029 kb on + strand at 956.029 kb on + strand at 956.029 kb on + strand at 956.029 kb on + strand at 956.029 kb on + strand at 956.030 kb on - strand at 956.030 kb on - strand at 956.030 kb on - strand at 956.030 kb on - strand at 956.030 kb on - strand at 956.031 kb on + strand at 956.031 kb on + strand at 956.031 kb on + strand at 956.032 kb on - strand at 956.032 kb on - strand at 956.193 kb on + strand, within RR42_RS04300 at 956.193 kb on + strand, within RR42_RS04300 at 956.194 kb on - strand, within RR42_RS04300 at 956.194 kb on - strand, within RR42_RS04300 at 956.590 kb on + strand, within RR42_RS04305 at 956.591 kb on - strand, within RR42_RS04305 at 956.592 kb on + strand, within RR42_RS04305 at 956.592 kb on + strand, within RR42_RS04305 at 956.592 kb on + strand, within RR42_RS04305 at 956.592 kb on + strand, within RR42_RS04305 at 956.592 kb on + strand, within RR42_RS04305 at 956.593 kb on - strand, within RR42_RS04305 at 956.593 kb on - strand, within RR42_RS04305 at 956.625 kb on + strand, within RR42_RS04305 at 956.626 kb on - strand, within RR42_RS04305 at 956.626 kb on - strand, within RR42_RS04305
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 953,764 + -2.3 953,764 + -0.7 953,765 - -0.9 953,886 + -0.5 953,900 + -2.2 953,939 + +1.0 953,939 + -0.7 953,955 + -0.2 953,955 + +0.2 953,955 + -1.3 953,986 + -0.0 954,020 + RR42_RS04290 0.13 -0.0 954,020 + RR42_RS04290 0.13 +1.1 954,021 - RR42_RS04290 0.13 +0.6 954,021 - RR42_RS04290 0.13 -0.1 954,043 + RR42_RS04290 0.17 -0.3 954,242 + RR42_RS04290 0.53 -0.8 954,242 + RR42_RS04290 0.53 +0.0 954,242 + RR42_RS04290 0.53 +0.7 954,243 - RR42_RS04290 0.53 -1.0 954,247 + RR42_RS04290 0.54 +0.1 954,247 + RR42_RS04290 0.54 -0.5 954,248 - RR42_RS04290 0.54 -0.3 954,257 + RR42_RS04290 0.56 +0.3 954,415 + RR42_RS04290 0.84 +0.3 954,415 + RR42_RS04290 0.84 +0.7 954,415 + RR42_RS04290 0.84 -0.4 954,415 + RR42_RS04290 0.84 +1.4 954,415 + RR42_RS04290 0.84 -0.2 954,415 + RR42_RS04290 0.84 -0.5 954,415 + RR42_RS04290 0.84 -0.5 954,416 - RR42_RS04290 0.85 -0.3 954,460 + -0.3 954,460 + +0.9 954,460 + +0.8 954,461 - +0.4 954,461 - -1.0 954,461 - -1.1 954,475 - +1.2 954,499 + -0.0 954,574 + -0.3 954,723 - RR42_RS04295 0.15 +0.1 954,760 + RR42_RS04295 0.18 +0.3 954,761 - RR42_RS04295 0.18 -0.0 954,763 + RR42_RS04295 0.18 -0.4 954,764 - RR42_RS04295 0.18 +0.4 954,764 - RR42_RS04295 0.18 -0.8 954,764 - RR42_RS04295 0.18 +0.4 954,764 - RR42_RS04295 0.18 -0.6 954,764 - RR42_RS04295 0.18 -0.4 954,812 - RR42_RS04295 0.22 +0.1 954,851 - RR42_RS04295 0.25 +0.5 954,851 - RR42_RS04295 0.25 -0.2 954,995 - RR42_RS04295 0.37 +0.6 955,385 - RR42_RS04295 0.68 -0.8 955,406 - RR42_RS04295 0.69 +0.5 955,406 - RR42_RS04295 0.69 -1.1 955,435 + RR42_RS04295 0.72 -1.3 955,435 + RR42_RS04295 0.72 +0.7 955,436 - RR42_RS04295 0.72 +0.7 955,436 - RR42_RS04295 0.72 -0.6 955,436 - RR42_RS04295 0.72 +0.9 955,436 - RR42_RS04295 0.72 -0.3 955,525 + RR42_RS04295 0.79 -1.0 955,688 - -0.1 955,863 + +2.6 955,881 + -0.6 955,882 - -1.1 955,899 + +0.7 956,003 + -0.3 956,027 + -1.0 956,027 + -2.3 956,027 + +0.7 956,027 + -0.2 956,028 - +0.1 956,029 + -0.2 956,029 + -1.1 956,029 + -0.1 956,029 + +0.5 956,029 + -0.3 956,029 + +0.1 956,030 - -0.2 956,030 - -1.2 956,030 - -0.6 956,030 - -0.9 956,030 - +0.3 956,031 + -0.3 956,031 + -0.1 956,031 + -0.2 956,032 - -0.4 956,032 - +1.3 956,193 + RR42_RS04300 0.44 -2.1 956,193 + RR42_RS04300 0.44 -0.5 956,194 - RR42_RS04300 0.45 -0.1 956,194 - RR42_RS04300 0.45 -1.2 956,590 + RR42_RS04305 0.18 -0.2 956,591 - RR42_RS04305 0.18 -0.6 956,592 + RR42_RS04305 0.18 +0.2 956,592 + RR42_RS04305 0.18 -0.4 956,592 + RR42_RS04305 0.18 -0.4 956,592 + RR42_RS04305 0.18 -0.6 956,592 + RR42_RS04305 0.18 +0.1 956,593 - RR42_RS04305 0.18 +0.2 956,593 - RR42_RS04305 0.18 -0.1 956,625 + RR42_RS04305 0.23 +0.4 956,626 - RR42_RS04305 0.23 +0.2 956,626 - RR42_RS04305 0.23 +0.1
Or see this region's nucleotide sequence