Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03435 and RR42_RS03440 are separated by 27 nucleotides RR42_RS03440 and RR42_RS03445 are separated by 179 nucleotides RR42_RS03445 and RR42_RS03450 are separated by 360 nucleotides
RR42_RS03435: RR42_RS03435 - XRE family transcriptional regulator, at 763,992 to 764,801
_RS03435
RR42_RS03440: RR42_RS03440 - 3-hydroxy-2-methylbutyryl-CoA dehydrogenase, at 764,829 to 765,587
_RS03440
RR42_RS03445: RR42_RS03445 - adenylate kinase, at 765,767 to 766,432
_RS03445
RR42_RS03450: RR42_RS03450 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 766,793 to 767,602
_RS03450
Position (kb) 765
766
767 Strain fitness (log2 ratio) -2
-1
0
1 at 764.831 kb on - strand at 765.115 kb on + strand, within RR42_RS03440 at 765.161 kb on + strand, within RR42_RS03440 at 765.161 kb on + strand, within RR42_RS03440 at 765.161 kb on + strand, within RR42_RS03440 at 765.162 kb on - strand, within RR42_RS03440 at 765.162 kb on - strand, within RR42_RS03440 at 765.162 kb on - strand, within RR42_RS03440 at 765.162 kb on - strand, within RR42_RS03440 at 765.162 kb on - strand, within RR42_RS03440 at 765.162 kb on - strand, within RR42_RS03440 at 765.162 kb on - strand, within RR42_RS03440 at 765.563 kb on + strand at 765.563 kb on + strand at 765.564 kb on - strand at 765.567 kb on + strand at 765.567 kb on + strand at 765.567 kb on + strand at 765.567 kb on + strand at 765.567 kb on + strand at 765.567 kb on + strand at 765.567 kb on + strand at 765.567 kb on + strand at 765.567 kb on + strand at 765.568 kb on - strand at 765.568 kb on - strand at 765.568 kb on - strand at 765.568 kb on - strand at 765.568 kb on - strand at 765.568 kb on - strand at 765.641 kb on - strand at 765.769 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.671 kb on - strand at 766.671 kb on - strand at 766.671 kb on - strand at 766.684 kb on - strand at 766.739 kb on + strand at 766.739 kb on + strand at 766.739 kb on + strand at 766.739 kb on + strand at 766.740 kb on - strand at 766.740 kb on - strand at 766.747 kb on - strand at 766.747 kb on - strand at 766.753 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 764,831 - -0.9 765,115 + RR42_RS03440 0.38 -0.6 765,161 + RR42_RS03440 0.44 -0.2 765,161 + RR42_RS03440 0.44 +0.1 765,161 + RR42_RS03440 0.44 +1.0 765,162 - RR42_RS03440 0.44 -2.1 765,162 - RR42_RS03440 0.44 -0.6 765,162 - RR42_RS03440 0.44 +0.2 765,162 - RR42_RS03440 0.44 -0.9 765,162 - RR42_RS03440 0.44 +0.2 765,162 - RR42_RS03440 0.44 -0.2 765,162 - RR42_RS03440 0.44 -0.5 765,563 + -1.1 765,563 + -0.9 765,564 - +0.4 765,567 + -0.6 765,567 + -0.1 765,567 + -0.5 765,567 + -0.1 765,567 + +0.1 765,567 + +1.1 765,567 + +0.8 765,567 + -0.4 765,567 + -0.7 765,568 - +0.0 765,568 - +0.8 765,568 - -0.4 765,568 - +0.0 765,568 - +0.2 765,568 - +0.7 765,641 - +0.1 765,769 - -0.4 766,461 - -2.0 766,461 - +0.4 766,461 - -0.9 766,461 - -0.3 766,461 - -1.4 766,461 - +0.5 766,461 - +0.1 766,461 - -0.2 766,671 - +1.0 766,671 - -0.4 766,671 - +0.5 766,684 - -1.9 766,739 + +0.1 766,739 + -0.2 766,739 + +0.4 766,739 + -0.0 766,740 - +1.4 766,740 - -0.1 766,747 - -0.6 766,747 - +0.1 766,753 + -0.6
Or see this region's nucleotide sequence