Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01585 and RR42_RS01590 are separated by 12 nucleotides RR42_RS01590 and RR42_RS01595 are separated by 183 nucleotides RR42_RS01595 and RR42_RS01600 are separated by 367 nucleotides
RR42_RS01585: RR42_RS01585 - amino acid permease, at 358,521 to 359,915
_RS01585
RR42_RS01590: RR42_RS01590 - GntR family transcriptional regulator, at 359,928 to 361,334
_RS01590
RR42_RS01595: RR42_RS01595 - hypothetical protein, at 361,518 to 361,856
_RS01595
RR42_RS01600: RR42_RS01600 - methylmalonyl-CoA mutase, at 362,224 to 365,532
_RS01600
Position (kb) 359
360
361
362 Strain fitness (log2 ratio) -2
-1
0
1 at 359.216 kb on + strand, within RR42_RS01585 at 359.319 kb on + strand, within RR42_RS01585 at 359.319 kb on + strand, within RR42_RS01585 at 359.319 kb on + strand, within RR42_RS01585 at 359.320 kb on - strand, within RR42_RS01585 at 359.320 kb on - strand, within RR42_RS01585 at 359.320 kb on - strand, within RR42_RS01585 at 359.406 kb on + strand, within RR42_RS01585 at 359.868 kb on + strand at 359.868 kb on + strand at 359.869 kb on - strand at 359.869 kb on - strand at 360.037 kb on + strand at 360.113 kb on + strand, within RR42_RS01590 at 360.114 kb on - strand, within RR42_RS01590 at 360.151 kb on + strand, within RR42_RS01590 at 360.151 kb on + strand, within RR42_RS01590 at 360.232 kb on + strand, within RR42_RS01590 at 360.232 kb on + strand, within RR42_RS01590 at 360.232 kb on + strand, within RR42_RS01590 at 360.232 kb on + strand, within RR42_RS01590 at 360.233 kb on - strand, within RR42_RS01590 at 360.358 kb on + strand, within RR42_RS01590 at 360.407 kb on - strand, within RR42_RS01590 at 360.407 kb on - strand, within RR42_RS01590 at 360.452 kb on - strand, within RR42_RS01590 at 360.452 kb on - strand, within RR42_RS01590 at 360.452 kb on - strand, within RR42_RS01590 at 360.476 kb on + strand, within RR42_RS01590 at 360.477 kb on - strand, within RR42_RS01590 at 360.477 kb on - strand, within RR42_RS01590 at 360.710 kb on - strand, within RR42_RS01590 at 360.712 kb on + strand, within RR42_RS01590 at 360.737 kb on + strand, within RR42_RS01590 at 360.892 kb on + strand, within RR42_RS01590 at 361.031 kb on + strand, within RR42_RS01590 at 361.031 kb on + strand, within RR42_RS01590 at 361.032 kb on - strand, within RR42_RS01590 at 361.152 kb on + strand, within RR42_RS01590 at 361.165 kb on + strand, within RR42_RS01590 at 361.166 kb on - strand, within RR42_RS01590 at 361.414 kb on + strand at 361.415 kb on - strand at 361.430 kb on + strand at 361.430 kb on + strand at 361.431 kb on - strand at 361.431 kb on - strand at 361.431 kb on - strand at 361.528 kb on + strand at 361.529 kb on - strand at 361.529 kb on - strand at 361.912 kb on + strand at 361.912 kb on + strand at 361.918 kb on + strand at 361.918 kb on + strand at 361.919 kb on - strand at 361.919 kb on - strand at 361.919 kb on - strand at 362.022 kb on + strand at 362.023 kb on - strand at 362.023 kb on - strand at 362.039 kb on - strand at 362.039 kb on - strand at 362.039 kb on - strand at 362.095 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 359,216 + RR42_RS01585 0.50 -0.4 359,319 + RR42_RS01585 0.57 -0.2 359,319 + RR42_RS01585 0.57 -1.1 359,319 + RR42_RS01585 0.57 +0.3 359,320 - RR42_RS01585 0.57 -0.7 359,320 - RR42_RS01585 0.57 -0.3 359,320 - RR42_RS01585 0.57 +0.4 359,406 + RR42_RS01585 0.63 +0.4 359,868 + -1.6 359,868 + +0.3 359,869 - +0.3 359,869 - +0.3 360,037 + -1.1 360,113 + RR42_RS01590 0.13 -0.1 360,114 - RR42_RS01590 0.13 +0.3 360,151 + RR42_RS01590 0.16 -0.5 360,151 + RR42_RS01590 0.16 +0.0 360,232 + RR42_RS01590 0.22 -0.1 360,232 + RR42_RS01590 0.22 -0.6 360,232 + RR42_RS01590 0.22 +0.7 360,232 + RR42_RS01590 0.22 -0.9 360,233 - RR42_RS01590 0.22 +1.2 360,358 + RR42_RS01590 0.31 -0.2 360,407 - RR42_RS01590 0.34 -0.1 360,407 - RR42_RS01590 0.34 -0.4 360,452 - RR42_RS01590 0.37 +0.4 360,452 - RR42_RS01590 0.37 +0.4 360,452 - RR42_RS01590 0.37 -0.3 360,476 + RR42_RS01590 0.39 +0.3 360,477 - RR42_RS01590 0.39 -0.1 360,477 - RR42_RS01590 0.39 -0.3 360,710 - RR42_RS01590 0.56 +1.5 360,712 + RR42_RS01590 0.56 -0.8 360,737 + RR42_RS01590 0.57 +0.4 360,892 + RR42_RS01590 0.69 +1.0 361,031 + RR42_RS01590 0.78 -0.3 361,031 + RR42_RS01590 0.78 -0.1 361,032 - RR42_RS01590 0.78 -0.1 361,152 + RR42_RS01590 0.87 +0.2 361,165 + RR42_RS01590 0.88 -0.2 361,166 - RR42_RS01590 0.88 +0.7 361,414 + +0.1 361,415 - -0.9 361,430 + -1.5 361,430 + +1.3 361,431 - -1.4 361,431 - -0.1 361,431 - +1.6 361,528 + +0.4 361,529 - -0.7 361,529 - -0.2 361,912 + -1.4 361,912 + +1.2 361,918 + +0.3 361,918 + -2.0 361,919 - -1.6 361,919 - +0.3 361,919 - -0.3 362,022 + -0.5 362,023 - +0.1 362,023 - -0.4 362,039 - +0.3 362,039 - +0.1 362,039 - +0.9 362,095 + +0.0
Or see this region's nucleotide sequence