Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS20135 and HSERO_RS20140 are separated by 3 nucleotides HSERO_RS20140 and HSERO_RS20145 are separated by 82 nucleotides HSERO_RS20145 and HSERO_RS20150 are separated by 56 nucleotides
HSERO_RS20135: HSERO_RS20135 - type VI secretion protein, at 4,623,141 to 4,624,133
_RS20135
HSERO_RS20140: HSERO_RS20140 - cell envelope biogenesis protein OmpA, at 4,624,137 to 4,624,940
_RS20140
HSERO_RS20145: HSERO_RS20145 - type VI secretion protein, at 4,625,023 to 4,626,150
_RS20145
HSERO_RS20150: HSERO_RS20150 - ATPase, at 4,626,207 to 4,628,876
_RS20150
Position (kb) 4625
4626
4627 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4624.034 kb on + strand at 4624.201 kb on - strand at 4624.240 kb on + strand, within HSERO_RS20140 at 4624.248 kb on - strand, within HSERO_RS20140 at 4624.265 kb on + strand, within HSERO_RS20140 at 4624.273 kb on - strand, within HSERO_RS20140 at 4624.302 kb on + strand, within HSERO_RS20140 at 4624.330 kb on + strand, within HSERO_RS20140 at 4624.378 kb on - strand, within HSERO_RS20140 at 4624.429 kb on - strand, within HSERO_RS20140 at 4624.559 kb on - strand, within HSERO_RS20140 at 4624.593 kb on + strand, within HSERO_RS20140 at 4624.600 kb on + strand, within HSERO_RS20140 at 4624.796 kb on + strand, within HSERO_RS20140 at 4624.867 kb on + strand at 4624.867 kb on + strand at 4624.955 kb on - strand at 4625.050 kb on + strand at 4625.104 kb on - strand at 4625.227 kb on - strand, within HSERO_RS20145 at 4625.358 kb on - strand, within HSERO_RS20145 at 4625.376 kb on + strand, within HSERO_RS20145 at 4625.791 kb on - strand, within HSERO_RS20145 at 4625.791 kb on - strand, within HSERO_RS20145 at 4625.986 kb on + strand, within HSERO_RS20145 at 4626.035 kb on - strand, within HSERO_RS20145 at 4626.085 kb on - strand at 4626.207 kb on + strand at 4626.282 kb on - strand at 4626.378 kb on + strand at 4626.386 kb on - strand at 4626.517 kb on + strand, within HSERO_RS20150 at 4626.587 kb on + strand, within HSERO_RS20150 at 4626.635 kb on - strand, within HSERO_RS20150 at 4626.673 kb on - strand, within HSERO_RS20150 at 4626.768 kb on - strand, within HSERO_RS20150 at 4626.788 kb on + strand, within HSERO_RS20150 at 4626.817 kb on + strand, within HSERO_RS20150 at 4626.830 kb on - strand, within HSERO_RS20150 at 4626.870 kb on + strand, within HSERO_RS20150 at 4626.870 kb on + strand, within HSERO_RS20150 at 4626.878 kb on - strand, within HSERO_RS20150 at 4626.878 kb on - strand, within HSERO_RS20150 at 4626.919 kb on - strand, within HSERO_RS20150 at 4626.940 kb on + strand, within HSERO_RS20150 at 4626.948 kb on - strand, within HSERO_RS20150 at 4626.968 kb on - strand, within HSERO_RS20150 at 4627.015 kb on + strand at 4627.042 kb on - strand, within HSERO_RS20150 at 4627.122 kb on + strand, within HSERO_RS20150
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 4,624,034 + -0.0 4,624,201 - -0.8 4,624,240 + HSERO_RS20140 0.13 +1.4 4,624,248 - HSERO_RS20140 0.14 +0.1 4,624,265 + HSERO_RS20140 0.16 -0.5 4,624,273 - HSERO_RS20140 0.17 -0.6 4,624,302 + HSERO_RS20140 0.21 +0.7 4,624,330 + HSERO_RS20140 0.24 +0.3 4,624,378 - HSERO_RS20140 0.30 -0.6 4,624,429 - HSERO_RS20140 0.36 +0.3 4,624,559 - HSERO_RS20140 0.52 +0.2 4,624,593 + HSERO_RS20140 0.57 -0.5 4,624,600 + HSERO_RS20140 0.58 +0.3 4,624,796 + HSERO_RS20140 0.82 -0.5 4,624,867 + -0.0 4,624,867 + -0.1 4,624,955 - -0.2 4,625,050 + -0.2 4,625,104 - -0.4 4,625,227 - HSERO_RS20145 0.18 +0.2 4,625,358 - HSERO_RS20145 0.30 -0.5 4,625,376 + HSERO_RS20145 0.31 +0.4 4,625,791 - HSERO_RS20145 0.68 -2.0 4,625,791 - HSERO_RS20145 0.68 -0.2 4,625,986 + HSERO_RS20145 0.85 +1.4 4,626,035 - HSERO_RS20145 0.90 +0.2 4,626,085 - +0.2 4,626,207 + +0.7 4,626,282 - +0.2 4,626,378 + +0.5 4,626,386 - +0.2 4,626,517 + HSERO_RS20150 0.12 -0.4 4,626,587 + HSERO_RS20150 0.14 -0.3 4,626,635 - HSERO_RS20150 0.16 +0.7 4,626,673 - HSERO_RS20150 0.17 +0.4 4,626,768 - HSERO_RS20150 0.21 +0.2 4,626,788 + HSERO_RS20150 0.22 -0.6 4,626,817 + HSERO_RS20150 0.23 +0.2 4,626,830 - HSERO_RS20150 0.23 -0.6 4,626,870 + HSERO_RS20150 0.25 +0.4 4,626,870 + HSERO_RS20150 0.25 -0.3 4,626,878 - HSERO_RS20150 0.25 +0.5 4,626,878 - HSERO_RS20150 0.25 -0.1 4,626,919 - HSERO_RS20150 0.27 -0.0 4,626,940 + HSERO_RS20150 0.27 +0.1 4,626,948 - HSERO_RS20150 0.28 -0.1 4,626,968 - HSERO_RS20150 0.29 +0.0 4,627,015 + +3.3 4,627,042 - HSERO_RS20150 0.31 -0.4 4,627,122 + HSERO_RS20150 0.34 -0.1
Or see this region's nucleotide sequence