Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19545 and HSERO_RS19550 are separated by 197 nucleotides HSERO_RS19550 and HSERO_RS19555 overlap by 4 nucleotides HSERO_RS19555 and HSERO_RS19560 are separated by 54 nucleotides
HSERO_RS19545: HSERO_RS19545 - formamidopyrimidine-DNA glycosylase, at 4,479,457 to 4,480,278
_RS19545
HSERO_RS19550: HSERO_RS19550 - hypothetical protein, at 4,480,476 to 4,482,278
_RS19550
HSERO_RS19555: HSERO_RS19555 - membrane protein, at 4,482,275 to 4,482,907
_RS19555
HSERO_RS19560: HSERO_RS19560 - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, at 4,482,962 to 4,483,831
_RS19560
Position (kb) 4480
4481
4482
4483 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4479.547 kb on - strand, within HSERO_RS19545 at 4479.672 kb on - strand at 4479.675 kb on + strand, within HSERO_RS19545 at 4479.876 kb on + strand, within HSERO_RS19545 at 4479.876 kb on + strand, within HSERO_RS19545 at 4479.876 kb on + strand, within HSERO_RS19545 at 4479.884 kb on - strand, within HSERO_RS19545 at 4479.922 kb on - strand, within HSERO_RS19545 at 4479.937 kb on - strand, within HSERO_RS19545 at 4479.957 kb on + strand, within HSERO_RS19545 at 4480.060 kb on - strand, within HSERO_RS19545 at 4480.083 kb on + strand, within HSERO_RS19545 at 4480.172 kb on + strand, within HSERO_RS19545 at 4480.220 kb on + strand at 4480.221 kb on + strand at 4480.358 kb on + strand at 4480.408 kb on - strand at 4481.435 kb on + strand, within HSERO_RS19550 at 4481.578 kb on + strand, within HSERO_RS19550 at 4481.845 kb on + strand, within HSERO_RS19550 at 4482.280 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 4,479,547 - HSERO_RS19545 0.11 -0.8 4,479,672 - -0.1 4,479,675 + HSERO_RS19545 0.27 +0.4 4,479,876 + HSERO_RS19545 0.51 +0.8 4,479,876 + HSERO_RS19545 0.51 +0.2 4,479,876 + HSERO_RS19545 0.51 -1.5 4,479,884 - HSERO_RS19545 0.52 -0.9 4,479,922 - HSERO_RS19545 0.57 -0.8 4,479,937 - HSERO_RS19545 0.58 -0.4 4,479,957 + HSERO_RS19545 0.61 -0.1 4,480,060 - HSERO_RS19545 0.73 -1.2 4,480,083 + HSERO_RS19545 0.76 +0.3 4,480,172 + HSERO_RS19545 0.87 -0.5 4,480,220 + +0.0 4,480,221 + +2.2 4,480,358 + +0.7 4,480,408 - +0.1 4,481,435 + HSERO_RS19550 0.53 -1.1 4,481,578 + HSERO_RS19550 0.61 -2.7 4,481,845 + HSERO_RS19550 0.76 -1.4 4,482,280 - -4.4
Or see this region's nucleotide sequence