Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS02255

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS02250 and HSERO_RS02255 are separated by 207 nucleotidesHSERO_RS02255 and HSERO_RS02260 are separated by 0 nucleotides HSERO_RS02250: HSERO_RS02250 - hypothetical protein, at 491,474 to 492,166 _RS02250 HSERO_RS02255: HSERO_RS02255 - decarboxylase, at 492,374 to 493,120 _RS02255 HSERO_RS02260: HSERO_RS02260 - DNA polymerase I, at 493,121 to 495,883 _RS02260 Position (kb) 492 493 494Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 491.392 kb on + strandat 491.446 kb on - strandat 491.495 kb on + strandat 491.503 kb on - strandat 491.713 kb on + strand, within HSERO_RS02250at 491.850 kb on - strand, within HSERO_RS02250at 491.945 kb on - strand, within HSERO_RS02250at 491.960 kb on + strand, within HSERO_RS02250at 492.018 kb on + strand, within HSERO_RS02250at 492.123 kb on + strandat 492.124 kb on + strandat 492.175 kb on + strandat 492.270 kb on + strandat 492.270 kb on + strandat 492.370 kb on + strandat 492.390 kb on - strandat 492.395 kb on - strandat 492.480 kb on + strand, within HSERO_RS02255at 492.564 kb on + strand, within HSERO_RS02255at 492.855 kb on - strand, within HSERO_RS02255at 492.987 kb on - strand, within HSERO_RS02255at 493.909 kb on + strand, within HSERO_RS02260at 493.917 kb on - strand, within HSERO_RS02260

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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491,392 + +0.2
491,446 - -0.2
491,495 + +0.5
491,503 - -1.2
491,713 + HSERO_RS02250 0.34 -0.2
491,850 - HSERO_RS02250 0.54 -2.9
491,945 - HSERO_RS02250 0.68 -1.1
491,960 + HSERO_RS02250 0.70 +0.0
492,018 + HSERO_RS02250 0.78 +0.3
492,123 + -0.4
492,124 + +0.3
492,175 + +0.7
492,270 + -0.3
492,270 + +0.1
492,370 + -2.1
492,390 - -0.0
492,395 - -0.3
492,480 + HSERO_RS02255 0.14 -1.0
492,564 + HSERO_RS02255 0.25 -1.9
492,855 - HSERO_RS02255 0.64 -0.9
492,987 - HSERO_RS02255 0.82 -1.7
493,909 + HSERO_RS02260 0.29 -2.2
493,917 - HSERO_RS02260 0.29 -4.2

Or see this region's nucleotide sequence