Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24435 and CA265_RS24440 are separated by 10 nucleotides CA265_RS24440 and CA265_RS24445 are separated by 31 nucleotides CA265_RS24445 and CA265_RS24450 are separated by 1 nucleotides CA265_RS24450 and CA265_RS24455 are separated by 372 nucleotides
CA265_RS24435: CA265_RS24435 - hypothetical protein, at 5,950,898 to 5,952,796
_RS24435
CA265_RS24440: CA265_RS24440 - hypothetical protein, at 5,952,807 to 5,953,856
_RS24440
CA265_RS24445: CA265_RS24445 - hypothetical protein, at 5,953,888 to 5,954,124
_RS24445
CA265_RS24450: CA265_RS24450 - hypothetical protein, at 5,954,126 to 5,954,431
_RS24450
CA265_RS24455: CA265_RS24455 - hypothetical protein, at 5,954,804 to 5,955,169
_RS24455
Position (kb) 5952
5953
5954 Strain fitness (log2 ratio) -2
-1
0
1 at 5951.928 kb on - strand, within CA265_RS24435 at 5951.928 kb on - strand, within CA265_RS24435 at 5951.981 kb on - strand, within CA265_RS24435 at 5951.981 kb on - strand, within CA265_RS24435 at 5951.995 kb on - strand, within CA265_RS24435 at 5952.076 kb on - strand, within CA265_RS24435 at 5952.203 kb on - strand, within CA265_RS24435 at 5952.306 kb on - strand, within CA265_RS24435 at 5952.368 kb on - strand, within CA265_RS24435 at 5952.368 kb on - strand, within CA265_RS24435 at 5952.463 kb on - strand, within CA265_RS24435 at 5952.508 kb on - strand, within CA265_RS24435 at 5952.599 kb on - strand, within CA265_RS24435 at 5952.610 kb on - strand at 5952.610 kb on - strand at 5952.628 kb on - strand at 5952.628 kb on - strand at 5952.628 kb on - strand at 5952.671 kb on - strand at 5952.699 kb on - strand at 5952.699 kb on - strand at 5952.699 kb on - strand at 5952.699 kb on - strand at 5952.723 kb on - strand at 5952.884 kb on + strand at 5952.940 kb on - strand, within CA265_RS24440 at 5952.952 kb on - strand, within CA265_RS24440 at 5952.957 kb on + strand, within CA265_RS24440 at 5952.962 kb on - strand, within CA265_RS24440 at 5953.051 kb on + strand, within CA265_RS24440 at 5953.070 kb on + strand, within CA265_RS24440 at 5953.070 kb on + strand, within CA265_RS24440 at 5953.072 kb on + strand, within CA265_RS24440 at 5953.072 kb on + strand, within CA265_RS24440 at 5953.073 kb on - strand, within CA265_RS24440 at 5953.092 kb on - strand, within CA265_RS24440 at 5953.092 kb on - strand, within CA265_RS24440 at 5953.100 kb on + strand, within CA265_RS24440 at 5953.102 kb on + strand, within CA265_RS24440 at 5953.139 kb on + strand, within CA265_RS24440 at 5953.161 kb on - strand, within CA265_RS24440 at 5953.187 kb on - strand, within CA265_RS24440 at 5953.216 kb on - strand, within CA265_RS24440 at 5953.229 kb on + strand, within CA265_RS24440 at 5953.230 kb on - strand, within CA265_RS24440 at 5953.258 kb on + strand, within CA265_RS24440 at 5953.262 kb on + strand at 5953.271 kb on + strand, within CA265_RS24440 at 5953.281 kb on + strand, within CA265_RS24440 at 5953.282 kb on - strand, within CA265_RS24440 at 5953.282 kb on - strand, within CA265_RS24440 at 5953.337 kb on + strand, within CA265_RS24440 at 5953.338 kb on - strand, within CA265_RS24440 at 5953.346 kb on + strand, within CA265_RS24440 at 5953.380 kb on - strand, within CA265_RS24440 at 5953.396 kb on - strand, within CA265_RS24440 at 5953.396 kb on - strand, within CA265_RS24440 at 5953.421 kb on + strand, within CA265_RS24440 at 5953.431 kb on + strand, within CA265_RS24440 at 5953.433 kb on + strand, within CA265_RS24440 at 5953.534 kb on - strand, within CA265_RS24440 at 5953.596 kb on + strand, within CA265_RS24440 at 5953.597 kb on - strand, within CA265_RS24440 at 5953.614 kb on + strand, within CA265_RS24440 at 5953.756 kb on + strand at 5953.770 kb on + strand at 5953.773 kb on - strand at 5953.806 kb on - strand at 5953.880 kb on + strand at 5953.896 kb on + strand at 5953.897 kb on - strand at 5953.906 kb on - strand at 5953.940 kb on + strand, within CA265_RS24445 at 5953.975 kb on - strand, within CA265_RS24445 at 5953.992 kb on + strand, within CA265_RS24445 at 5954.020 kb on + strand, within CA265_RS24445 at 5954.023 kb on - strand, within CA265_RS24445 at 5954.052 kb on - strand, within CA265_RS24445 at 5954.076 kb on + strand, within CA265_RS24445 at 5954.093 kb on - strand, within CA265_RS24445 at 5954.101 kb on + strand at 5954.131 kb on + strand at 5954.132 kb on - strand at 5954.132 kb on - strand at 5954.174 kb on - strand, within CA265_RS24450 at 5954.190 kb on - strand, within CA265_RS24450 at 5954.194 kb on - strand, within CA265_RS24450 at 5954.194 kb on - strand, within CA265_RS24450 at 5954.219 kb on - strand, within CA265_RS24450 at 5954.238 kb on - strand, within CA265_RS24450 at 5954.278 kb on - strand, within CA265_RS24450 at 5954.357 kb on - strand, within CA265_RS24450 at 5954.360 kb on + strand, within CA265_RS24450 at 5954.360 kb on + strand, within CA265_RS24450 at 5954.361 kb on - strand, within CA265_RS24450 at 5954.363 kb on - strand, within CA265_RS24450 at 5954.389 kb on + strand, within CA265_RS24450 at 5954.389 kb on + strand, within CA265_RS24450 at 5954.389 kb on + strand, within CA265_RS24450 at 5954.441 kb on + strand at 5954.461 kb on - strand at 5954.465 kb on + strand at 5954.598 kb on + strand at 5954.599 kb on - strand at 5954.636 kb on + strand at 5954.679 kb on - strand at 5954.679 kb on - strand at 5954.730 kb on - strand at 5954.730 kb on - strand at 5954.746 kb on + strand at 5954.748 kb on + strand at 5954.840 kb on + strand at 5954.841 kb on - strand, within CA265_RS24455 at 5954.841 kb on - strand, within CA265_RS24455 at 5954.850 kb on - strand, within CA265_RS24455
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 5,951,928 - CA265_RS24435 0.54 -0.4 5,951,928 - CA265_RS24435 0.54 +1.6 5,951,981 - CA265_RS24435 0.57 +0.6 5,951,981 - CA265_RS24435 0.57 +0.3 5,951,995 - CA265_RS24435 0.58 -0.4 5,952,076 - CA265_RS24435 0.62 +0.1 5,952,203 - CA265_RS24435 0.69 -0.6 5,952,306 - CA265_RS24435 0.74 +0.4 5,952,368 - CA265_RS24435 0.77 -0.1 5,952,368 - CA265_RS24435 0.77 +0.1 5,952,463 - CA265_RS24435 0.82 +0.4 5,952,508 - CA265_RS24435 0.85 -0.5 5,952,599 - CA265_RS24435 0.90 +0.3 5,952,610 - +0.8 5,952,610 - -1.4 5,952,628 - +0.2 5,952,628 - +0.4 5,952,628 - +0.1 5,952,671 - +0.1 5,952,699 - +1.4 5,952,699 - +0.3 5,952,699 - -0.1 5,952,699 - -0.0 5,952,723 - +0.3 5,952,884 + -0.9 5,952,940 - CA265_RS24440 0.13 -0.3 5,952,952 - CA265_RS24440 0.14 -0.9 5,952,957 + CA265_RS24440 0.14 -1.3 5,952,962 - CA265_RS24440 0.15 -0.8 5,953,051 + CA265_RS24440 0.23 +0.7 5,953,070 + CA265_RS24440 0.25 +0.6 5,953,070 + CA265_RS24440 0.25 -1.4 5,953,072 + CA265_RS24440 0.25 -1.4 5,953,072 + CA265_RS24440 0.25 -0.5 5,953,073 - CA265_RS24440 0.25 -1.0 5,953,092 - CA265_RS24440 0.27 -0.1 5,953,092 - CA265_RS24440 0.27 -1.5 5,953,100 + CA265_RS24440 0.28 +0.3 5,953,102 + CA265_RS24440 0.28 +0.6 5,953,139 + CA265_RS24440 0.32 -0.3 5,953,161 - CA265_RS24440 0.34 +0.7 5,953,187 - CA265_RS24440 0.36 +0.3 5,953,216 - CA265_RS24440 0.39 -0.6 5,953,229 + CA265_RS24440 0.40 -0.0 5,953,230 - CA265_RS24440 0.40 +0.6 5,953,258 + CA265_RS24440 0.43 -0.5 5,953,262 + -0.5 5,953,271 + CA265_RS24440 0.44 -0.3 5,953,281 + CA265_RS24440 0.45 -0.4 5,953,282 - CA265_RS24440 0.45 +0.2 5,953,282 - CA265_RS24440 0.45 +0.2 5,953,337 + CA265_RS24440 0.50 -1.0 5,953,338 - CA265_RS24440 0.51 -0.2 5,953,346 + CA265_RS24440 0.51 -1.0 5,953,380 - CA265_RS24440 0.55 -1.0 5,953,396 - CA265_RS24440 0.56 -0.5 5,953,396 - CA265_RS24440 0.56 +0.4 5,953,421 + CA265_RS24440 0.58 -1.0 5,953,431 + CA265_RS24440 0.59 -0.1 5,953,433 + CA265_RS24440 0.60 -1.0 5,953,534 - CA265_RS24440 0.69 -1.6 5,953,596 + CA265_RS24440 0.75 +0.1 5,953,597 - CA265_RS24440 0.75 -0.1 5,953,614 + CA265_RS24440 0.77 -0.0 5,953,756 + +0.2 5,953,770 + -0.4 5,953,773 - -1.0 5,953,806 - +0.2 5,953,880 + +0.3 5,953,896 + -1.7 5,953,897 - +0.5 5,953,906 - -0.7 5,953,940 + CA265_RS24445 0.22 +0.3 5,953,975 - CA265_RS24445 0.37 -0.4 5,953,992 + CA265_RS24445 0.44 +0.4 5,954,020 + CA265_RS24445 0.56 -0.3 5,954,023 - CA265_RS24445 0.57 +0.4 5,954,052 - CA265_RS24445 0.69 -0.4 5,954,076 + CA265_RS24445 0.79 -0.6 5,954,093 - CA265_RS24445 0.86 -0.2 5,954,101 + -1.7 5,954,131 + -1.0 5,954,132 - +0.4 5,954,132 - -0.0 5,954,174 - CA265_RS24450 0.16 -0.4 5,954,190 - CA265_RS24450 0.21 -0.3 5,954,194 - CA265_RS24450 0.22 -0.1 5,954,194 - CA265_RS24450 0.22 +0.2 5,954,219 - CA265_RS24450 0.30 -0.9 5,954,238 - CA265_RS24450 0.37 -0.2 5,954,278 - CA265_RS24450 0.50 +1.1 5,954,357 - CA265_RS24450 0.75 +0.6 5,954,360 + CA265_RS24450 0.76 -0.7 5,954,360 + CA265_RS24450 0.76 -1.8 5,954,361 - CA265_RS24450 0.77 +1.0 5,954,363 - CA265_RS24450 0.77 +0.3 5,954,389 + CA265_RS24450 0.86 +1.5 5,954,389 + CA265_RS24450 0.86 +0.4 5,954,389 + CA265_RS24450 0.86 -0.8 5,954,441 + +0.0 5,954,461 - +0.1 5,954,465 + +1.3 5,954,598 + -1.2 5,954,599 - +0.4 5,954,636 + -1.6 5,954,679 - +1.4 5,954,679 - +0.3 5,954,730 - +0.1 5,954,730 - -0.6 5,954,746 + -0.6 5,954,748 + +0.4 5,954,840 + +0.2 5,954,841 - CA265_RS24455 0.10 +0.5 5,954,841 - CA265_RS24455 0.10 -1.3 5,954,850 - CA265_RS24455 0.13 +0.4
Or see this region's nucleotide sequence