Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS23455

Experiment: Beta-Lactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS23450 and CA265_RS23455 are separated by 45 nucleotidesCA265_RS23455 and CA265_RS23460 are separated by 78 nucleotidesCA265_RS23460 and CA265_RS23465 are separated by 349 nucleotides CA265_RS23450: CA265_RS23450 - aspartate aminotransferase family protein, at 5,736,874 to 5,738,265 _RS23450 CA265_RS23455: CA265_RS23455 - hypothetical protein, at 5,738,311 to 5,738,613 _RS23455 CA265_RS23460: CA265_RS23460 - hypothetical protein, at 5,738,692 to 5,739,105 _RS23460 CA265_RS23465: CA265_RS23465 - threonine synthase, at 5,739,455 to 5,740,762 _RS23465 Position (kb) 5738 5739Strain fitness (log2 ratio) -2 -1 0 1 2at 5737.401 kb on - strand, within CA265_RS23450at 5737.429 kb on - strand, within CA265_RS23450at 5737.475 kb on + strand, within CA265_RS23450at 5737.476 kb on - strand, within CA265_RS23450at 5737.476 kb on - strand, within CA265_RS23450at 5737.533 kb on - strand, within CA265_RS23450at 5737.588 kb on - strand, within CA265_RS23450at 5737.588 kb on - strand, within CA265_RS23450at 5737.696 kb on + strand, within CA265_RS23450at 5737.731 kb on + strand, within CA265_RS23450at 5737.732 kb on - strand, within CA265_RS23450at 5737.732 kb on - strand, within CA265_RS23450at 5737.732 kb on - strand, within CA265_RS23450at 5737.761 kb on - strand, within CA265_RS23450at 5737.767 kb on - strand, within CA265_RS23450at 5737.922 kb on + strand, within CA265_RS23450at 5737.949 kb on - strand, within CA265_RS23450at 5737.983 kb on + strand, within CA265_RS23450at 5738.001 kb on - strand, within CA265_RS23450at 5738.042 kb on + strand, within CA265_RS23450at 5738.064 kb on + strand, within CA265_RS23450at 5738.121 kb on - strand, within CA265_RS23450at 5738.138 kb on + strandat 5738.143 kb on - strandat 5738.159 kb on - strandat 5738.276 kb on - strandat 5738.298 kb on + strandat 5738.299 kb on - strandat 5738.300 kb on + strandat 5738.332 kb on + strandat 5738.333 kb on - strandat 5738.343 kb on + strand, within CA265_RS23455at 5738.344 kb on - strand, within CA265_RS23455at 5738.351 kb on + strand, within CA265_RS23455at 5738.357 kb on + strand, within CA265_RS23455at 5738.396 kb on + strand, within CA265_RS23455at 5738.396 kb on + strand, within CA265_RS23455at 5738.397 kb on - strand, within CA265_RS23455at 5738.397 kb on - strand, within CA265_RS23455at 5738.544 kb on - strand, within CA265_RS23455at 5738.548 kb on - strand, within CA265_RS23455at 5738.592 kb on - strandat 5738.684 kb on + strandat 5738.684 kb on + strandat 5738.684 kb on + strandat 5738.687 kb on + strandat 5738.688 kb on - strandat 5738.688 kb on - strandat 5738.691 kb on + strandat 5738.795 kb on + strand, within CA265_RS23460at 5738.806 kb on - strand, within CA265_RS23460at 5738.833 kb on + strand, within CA265_RS23460at 5738.838 kb on + strand, within CA265_RS23460at 5738.864 kb on + strandat 5738.864 kb on + strand, within CA265_RS23460at 5739.031 kb on - strand, within CA265_RS23460at 5739.047 kb on + strand, within CA265_RS23460at 5739.100 kb on - strandat 5739.100 kb on - strandat 5739.106 kb on + strandat 5739.107 kb on - strandat 5739.163 kb on + strandat 5739.264 kb on + strandat 5739.339 kb on - strandat 5739.344 kb on + strandat 5739.346 kb on + strandat 5739.350 kb on - strandat 5739.396 kb on + strandat 5739.437 kb on + strandat 5739.454 kb on - strandat 5739.457 kb on - strandat 5739.539 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
remove
5,737,401 - CA265_RS23450 0.38 +1.9
5,737,429 - CA265_RS23450 0.40 +0.6
5,737,475 + CA265_RS23450 0.43 -0.3
5,737,476 - CA265_RS23450 0.43 -0.4
5,737,476 - CA265_RS23450 0.43 +0.6
5,737,533 - CA265_RS23450 0.47 +0.1
5,737,588 - CA265_RS23450 0.51 -0.0
5,737,588 - CA265_RS23450 0.51 +0.4
5,737,696 + CA265_RS23450 0.59 +1.2
5,737,731 + CA265_RS23450 0.62 +0.3
5,737,732 - CA265_RS23450 0.62 -0.7
5,737,732 - CA265_RS23450 0.62 -0.8
5,737,732 - CA265_RS23450 0.62 -1.3
5,737,761 - CA265_RS23450 0.64 +0.1
5,737,767 - CA265_RS23450 0.64 -0.6
5,737,922 + CA265_RS23450 0.75 +2.2
5,737,949 - CA265_RS23450 0.77 +0.1
5,737,983 + CA265_RS23450 0.80 +0.5
5,738,001 - CA265_RS23450 0.81 +0.2
5,738,042 + CA265_RS23450 0.84 +1.5
5,738,064 + CA265_RS23450 0.85 +1.7
5,738,121 - CA265_RS23450 0.90 +0.0
5,738,138 + +0.7
5,738,143 - -0.2
5,738,159 - +0.4
5,738,276 - -0.9
5,738,298 + +0.3
5,738,299 - +1.0
5,738,300 + +0.5
5,738,332 + +0.1
5,738,333 - -0.4
5,738,343 + CA265_RS23455 0.11 +0.9
5,738,344 - CA265_RS23455 0.11 +0.4
5,738,351 + CA265_RS23455 0.13 -0.1
5,738,357 + CA265_RS23455 0.15 -1.7
5,738,396 + CA265_RS23455 0.28 +1.2
5,738,396 + CA265_RS23455 0.28 +0.0
5,738,397 - CA265_RS23455 0.28 +0.7
5,738,397 - CA265_RS23455 0.28 +0.7
5,738,544 - CA265_RS23455 0.77 +1.1
5,738,548 - CA265_RS23455 0.78 -0.2
5,738,592 - -0.3
5,738,684 + -1.9
5,738,684 + -0.2
5,738,684 + +0.5
5,738,687 + -0.2
5,738,688 - -0.5
5,738,688 - +0.8
5,738,691 + +0.9
5,738,795 + CA265_RS23460 0.25 -1.2
5,738,806 - CA265_RS23460 0.28 +0.2
5,738,833 + CA265_RS23460 0.34 -0.0
5,738,838 + CA265_RS23460 0.35 -0.5
5,738,864 + +1.9
5,738,864 + CA265_RS23460 0.42 +0.3
5,739,031 - CA265_RS23460 0.82 +0.1
5,739,047 + CA265_RS23460 0.86 -0.8
5,739,100 - +0.3
5,739,100 - +0.2
5,739,106 + -0.2
5,739,107 - -0.4
5,739,163 + +0.1
5,739,264 + -1.3
5,739,339 - -0.7
5,739,344 + -0.1
5,739,346 + -0.3
5,739,350 - +0.2
5,739,396 + -1.2
5,739,437 + -0.1
5,739,454 - -1.4
5,739,457 - -0.9
5,739,539 + -0.1

Or see this region's nucleotide sequence