Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS17560 and CA265_RS17565 overlap by 29 nucleotides CA265_RS17565 and CA265_RS17570 overlap by 29 nucleotides CA265_RS17570 and CA265_RS17575 are separated by 363 nucleotides CA265_RS17575 and CA265_RS17580 are separated by 177 nucleotides CA265_RS17580 and CA265_RS17585 are separated by 106 nucleotides
CA265_RS17560: CA265_RS17560 - peptidylprolyl isomerase, at 4,377,171 to 4,377,656
_RS17560
CA265_RS17565: CA265_RS17565 - hypothetical protein, at 4,377,628 to 4,377,822
_RS17565
CA265_RS17570: CA265_RS17570 - peptidylprolyl isomerase, at 4,377,794 to 4,378,240
_RS17570
CA265_RS17575: CA265_RS17575 - acyl-CoA dehydrogenase, at 4,378,604 to 4,380,397
_RS17575
CA265_RS17580: CA265_RS17580 - four helix bundle protein, at 4,380,575 to 4,380,931
_RS17580
CA265_RS17585: CA265_RS17585 - acetyl-CoA acetyltransferase, at 4,381,038 to 4,382,213
_RS17585
Position (kb) 4378
4379
4380
4381 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4377.635 kb on + strand at 4377.636 kb on - strand at 4377.703 kb on + strand, within CA265_RS17565 at 4377.709 kb on - strand, within CA265_RS17565 at 4377.726 kb on + strand, within CA265_RS17565 at 4377.782 kb on + strand, within CA265_RS17565 at 4377.783 kb on - strand, within CA265_RS17565 at 4377.790 kb on - strand, within CA265_RS17565 at 4377.790 kb on - strand, within CA265_RS17565 at 4377.795 kb on + strand at 4377.796 kb on - strand at 4377.796 kb on - strand at 4377.796 kb on - strand at 4377.893 kb on + strand, within CA265_RS17570 at 4377.899 kb on + strand, within CA265_RS17570 at 4377.900 kb on - strand, within CA265_RS17570 at 4377.948 kb on - strand, within CA265_RS17570 at 4378.026 kb on + strand, within CA265_RS17570 at 4378.060 kb on + strand, within CA265_RS17570 at 4378.096 kb on - strand, within CA265_RS17570 at 4378.096 kb on - strand, within CA265_RS17570 at 4378.279 kb on + strand at 4378.279 kb on + strand at 4378.280 kb on - strand at 4378.285 kb on - strand at 4378.312 kb on + strand at 4378.313 kb on - strand at 4378.334 kb on - strand at 4378.340 kb on - strand at 4378.449 kb on + strand at 4378.500 kb on + strand at 4378.508 kb on + strand at 4378.509 kb on - strand at 4378.514 kb on - strand at 4378.514 kb on - strand at 4378.573 kb on + strand at 4378.595 kb on - strand at 4378.615 kb on - strand at 4378.618 kb on + strand at 4378.679 kb on + strand at 4378.680 kb on - strand at 4378.756 kb on + strand at 4378.756 kb on + strand at 4378.843 kb on + strand, within CA265_RS17575 at 4378.843 kb on + strand, within CA265_RS17575 at 4378.887 kb on + strand, within CA265_RS17575 at 4378.887 kb on + strand, within CA265_RS17575 at 4378.912 kb on + strand, within CA265_RS17575 at 4378.912 kb on + strand, within CA265_RS17575 at 4379.010 kb on - strand, within CA265_RS17575 at 4379.038 kb on + strand, within CA265_RS17575 at 4379.140 kb on + strand, within CA265_RS17575 at 4379.140 kb on + strand, within CA265_RS17575 at 4379.173 kb on + strand, within CA265_RS17575 at 4379.174 kb on - strand, within CA265_RS17575 at 4379.254 kb on - strand, within CA265_RS17575 at 4379.285 kb on + strand, within CA265_RS17575 at 4379.303 kb on + strand, within CA265_RS17575 at 4379.407 kb on + strand, within CA265_RS17575 at 4379.445 kb on + strand, within CA265_RS17575 at 4379.446 kb on - strand, within CA265_RS17575 at 4379.447 kb on + strand, within CA265_RS17575 at 4379.482 kb on + strand, within CA265_RS17575 at 4379.549 kb on + strand, within CA265_RS17575 at 4379.710 kb on + strand, within CA265_RS17575 at 4379.722 kb on + strand, within CA265_RS17575 at 4379.771 kb on - strand, within CA265_RS17575 at 4379.843 kb on - strand, within CA265_RS17575 at 4379.870 kb on - strand, within CA265_RS17575 at 4379.870 kb on - strand, within CA265_RS17575 at 4379.872 kb on - strand, within CA265_RS17575 at 4379.872 kb on - strand, within CA265_RS17575 at 4379.878 kb on + strand, within CA265_RS17575 at 4379.878 kb on + strand, within CA265_RS17575 at 4379.978 kb on + strand, within CA265_RS17575 at 4380.021 kb on + strand, within CA265_RS17575 at 4380.022 kb on - strand, within CA265_RS17575 at 4380.022 kb on - strand, within CA265_RS17575 at 4380.114 kb on - strand, within CA265_RS17575 at 4380.118 kb on + strand, within CA265_RS17575 at 4380.326 kb on + strand at 4380.337 kb on - strand at 4380.403 kb on + strand at 4380.410 kb on + strand at 4380.411 kb on - strand at 4380.428 kb on - strand at 4380.476 kb on + strand at 4380.477 kb on - strand at 4380.481 kb on - strand at 4380.495 kb on - strand at 4380.557 kb on + strand at 4380.562 kb on + strand at 4380.568 kb on + strand at 4380.692 kb on + strand, within CA265_RS17580 at 4380.693 kb on - strand, within CA265_RS17580 at 4380.693 kb on - strand, within CA265_RS17580 at 4380.727 kb on + strand, within CA265_RS17580 at 4380.730 kb on + strand, within CA265_RS17580 at 4380.785 kb on - strand, within CA265_RS17580 at 4380.870 kb on + strand, within CA265_RS17580 at 4380.872 kb on + strand, within CA265_RS17580 at 4380.931 kb on + strand at 4380.932 kb on - strand at 4380.932 kb on - strand at 4380.939 kb on - strand at 4380.941 kb on + strand at 4380.945 kb on - strand at 4380.955 kb on + strand at 4381.015 kb on + strand at 4381.015 kb on + strand at 4381.029 kb on + strand at 4381.032 kb on + strand at 4381.034 kb on + strand at 4381.227 kb on + strand, within CA265_RS17585 at 4381.358 kb on + strand, within CA265_RS17585 at 4381.358 kb on + strand, within CA265_RS17585 at 4381.358 kb on + strand, within CA265_RS17585 at 4381.358 kb on + strand, within CA265_RS17585 at 4381.393 kb on - strand, within CA265_RS17585
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 4,377,635 + -0.3 4,377,636 - -1.6 4,377,703 + CA265_RS17565 0.38 -0.0 4,377,709 - CA265_RS17565 0.42 +0.2 4,377,726 + CA265_RS17565 0.50 +0.7 4,377,782 + CA265_RS17565 0.79 -0.9 4,377,783 - CA265_RS17565 0.79 +0.7 4,377,790 - CA265_RS17565 0.83 +2.1 4,377,790 - CA265_RS17565 0.83 +0.1 4,377,795 + +0.5 4,377,796 - -0.1 4,377,796 - -0.2 4,377,796 - +0.2 4,377,893 + CA265_RS17570 0.22 +0.8 4,377,899 + CA265_RS17570 0.23 +0.6 4,377,900 - CA265_RS17570 0.24 -1.2 4,377,948 - CA265_RS17570 0.34 -0.2 4,378,026 + CA265_RS17570 0.52 -0.6 4,378,060 + CA265_RS17570 0.60 -3.1 4,378,096 - CA265_RS17570 0.68 -0.3 4,378,096 - CA265_RS17570 0.68 -0.0 4,378,279 + -1.1 4,378,279 + -0.5 4,378,280 - +0.2 4,378,285 - -0.3 4,378,312 + +0.1 4,378,313 - +0.5 4,378,334 - -0.3 4,378,340 - -0.2 4,378,449 + +0.3 4,378,500 + +0.1 4,378,508 + -0.5 4,378,509 - -0.3 4,378,514 - +0.5 4,378,514 - -0.3 4,378,573 + +0.4 4,378,595 - +0.1 4,378,615 - +0.6 4,378,618 + +0.1 4,378,679 + -0.4 4,378,680 - +0.4 4,378,756 + +0.4 4,378,756 + +1.4 4,378,843 + CA265_RS17575 0.13 +0.8 4,378,843 + CA265_RS17575 0.13 +1.2 4,378,887 + CA265_RS17575 0.16 +1.1 4,378,887 + CA265_RS17575 0.16 +0.5 4,378,912 + CA265_RS17575 0.17 +0.5 4,378,912 + CA265_RS17575 0.17 +0.7 4,379,010 - CA265_RS17575 0.23 +0.3 4,379,038 + CA265_RS17575 0.24 +0.9 4,379,140 + CA265_RS17575 0.30 +0.5 4,379,140 + CA265_RS17575 0.30 +1.2 4,379,173 + CA265_RS17575 0.32 +0.0 4,379,174 - CA265_RS17575 0.32 -0.4 4,379,254 - CA265_RS17575 0.36 -0.9 4,379,285 + CA265_RS17575 0.38 +1.0 4,379,303 + CA265_RS17575 0.39 +0.4 4,379,407 + CA265_RS17575 0.45 +1.0 4,379,445 + CA265_RS17575 0.47 +0.5 4,379,446 - CA265_RS17575 0.47 +1.4 4,379,447 + CA265_RS17575 0.47 +1.2 4,379,482 + CA265_RS17575 0.49 -0.9 4,379,549 + CA265_RS17575 0.53 +0.1 4,379,710 + CA265_RS17575 0.62 -0.4 4,379,722 + CA265_RS17575 0.62 +1.0 4,379,771 - CA265_RS17575 0.65 -1.1 4,379,843 - CA265_RS17575 0.69 +0.4 4,379,870 - CA265_RS17575 0.71 +1.0 4,379,870 - CA265_RS17575 0.71 -0.3 4,379,872 - CA265_RS17575 0.71 -0.5 4,379,872 - CA265_RS17575 0.71 +0.1 4,379,878 + CA265_RS17575 0.71 +1.1 4,379,878 + CA265_RS17575 0.71 +1.1 4,379,978 + CA265_RS17575 0.77 +1.2 4,380,021 + CA265_RS17575 0.79 +0.5 4,380,022 - CA265_RS17575 0.79 +0.0 4,380,022 - CA265_RS17575 0.79 +0.5 4,380,114 - CA265_RS17575 0.84 +0.1 4,380,118 + CA265_RS17575 0.84 +0.1 4,380,326 + +0.3 4,380,337 - +0.6 4,380,403 + +0.9 4,380,410 + +0.3 4,380,411 - +0.4 4,380,428 - -0.5 4,380,476 + +0.3 4,380,477 - -0.3 4,380,481 - +0.7 4,380,495 - -0.3 4,380,557 + +0.5 4,380,562 + -0.3 4,380,568 + +0.5 4,380,692 + CA265_RS17580 0.33 +0.0 4,380,693 - CA265_RS17580 0.33 -0.8 4,380,693 - CA265_RS17580 0.33 +0.8 4,380,727 + CA265_RS17580 0.43 -0.3 4,380,730 + CA265_RS17580 0.43 -1.7 4,380,785 - CA265_RS17580 0.59 -0.8 4,380,870 + CA265_RS17580 0.83 +0.4 4,380,872 + CA265_RS17580 0.83 +0.6 4,380,931 + +1.0 4,380,932 - -0.2 4,380,932 - -0.2 4,380,939 - +0.7 4,380,941 + +0.1 4,380,945 - -0.9 4,380,955 + +0.3 4,381,015 + +0.1 4,381,015 + +0.4 4,381,029 + -1.3 4,381,032 + -1.3 4,381,034 + +0.2 4,381,227 + CA265_RS17585 0.16 +0.9 4,381,358 + CA265_RS17585 0.27 +0.9 4,381,358 + CA265_RS17585 0.27 +1.0 4,381,358 + CA265_RS17585 0.27 +1.0 4,381,358 + CA265_RS17585 0.27 +0.1 4,381,393 - CA265_RS17585 0.30 +0.5
Or see this region's nucleotide sequence