Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04140

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS04135 and CA265_RS04140 are separated by 295 nucleotidesCA265_RS04140 and CA265_RS04145 are separated by 9 nucleotides CA265_RS04135: CA265_RS04135 - uroporphyrinogen-III C-methyltransferase, at 995,430 to 996,224 _RS04135 CA265_RS04140: CA265_RS04140 - glycogen synthase, at 996,520 to 997,932 _RS04140 CA265_RS04145: CA265_RS04145 - glucose-1-phosphate adenylyltransferase, at 997,942 to 999,210 _RS04145 Position (kb) 996 997 998Strain fitness (log2 ratio) -2 -1 0 1 2at 995.560 kb on - strand, within CA265_RS04135at 995.585 kb on - strand, within CA265_RS04135at 995.587 kb on + strand, within CA265_RS04135at 995.588 kb on - strand, within CA265_RS04135at 995.686 kb on - strand, within CA265_RS04135at 995.686 kb on - strand, within CA265_RS04135at 995.761 kb on + strand, within CA265_RS04135at 995.779 kb on - strand, within CA265_RS04135at 995.779 kb on - strand, within CA265_RS04135at 995.783 kb on + strand, within CA265_RS04135at 995.798 kb on + strand, within CA265_RS04135at 995.856 kb on + strand, within CA265_RS04135at 995.926 kb on + strand, within CA265_RS04135at 995.927 kb on - strand, within CA265_RS04135at 995.928 kb on + strand, within CA265_RS04135at 995.931 kb on - strand, within CA265_RS04135at 995.965 kb on + strand, within CA265_RS04135at 995.984 kb on - strand, within CA265_RS04135at 996.035 kb on - strand, within CA265_RS04135at 996.056 kb on + strand, within CA265_RS04135at 996.158 kb on - strandat 996.166 kb on + strandat 996.303 kb on - strandat 996.333 kb on + strandat 996.333 kb on + strandat 996.340 kb on - strandat 996.340 kb on - strandat 996.346 kb on + strandat 996.358 kb on - strandat 996.367 kb on + strandat 996.411 kb on - strandat 996.411 kb on - strandat 996.413 kb on - strandat 996.413 kb on - strandat 996.415 kb on - strandat 996.420 kb on - strandat 996.534 kb on + strandat 996.534 kb on + strandat 996.534 kb on + strandat 996.536 kb on + strandat 996.584 kb on + strandat 996.618 kb on - strandat 996.664 kb on - strand, within CA265_RS04140at 996.691 kb on + strand, within CA265_RS04140at 996.692 kb on - strand, within CA265_RS04140at 996.692 kb on - strand, within CA265_RS04140at 996.692 kb on - strand, within CA265_RS04140at 996.816 kb on - strand, within CA265_RS04140at 996.823 kb on + strand, within CA265_RS04140at 996.824 kb on - strand, within CA265_RS04140at 996.835 kb on - strand, within CA265_RS04140at 996.882 kb on - strand, within CA265_RS04140at 996.936 kb on - strand, within CA265_RS04140at 996.945 kb on + strand, within CA265_RS04140at 996.968 kb on - strand, within CA265_RS04140at 997.042 kb on - strand, within CA265_RS04140at 997.052 kb on - strand, within CA265_RS04140at 997.052 kb on - strand, within CA265_RS04140at 997.052 kb on - strand, within CA265_RS04140at 997.055 kb on + strand, within CA265_RS04140at 997.111 kb on - strand, within CA265_RS04140at 997.241 kb on + strand, within CA265_RS04140at 997.242 kb on - strand, within CA265_RS04140at 997.244 kb on + strand, within CA265_RS04140at 997.311 kb on - strand, within CA265_RS04140at 997.571 kb on - strand, within CA265_RS04140at 997.572 kb on + strand, within CA265_RS04140at 997.573 kb on - strand, within CA265_RS04140at 997.573 kb on - strand, within CA265_RS04140at 997.606 kb on + strand, within CA265_RS04140at 997.606 kb on + strand, within CA265_RS04140at 997.677 kb on - strand, within CA265_RS04140at 997.696 kb on - strand, within CA265_RS04140at 997.696 kb on - strand, within CA265_RS04140at 997.726 kb on - strand, within CA265_RS04140at 997.737 kb on + strand, within CA265_RS04140at 997.737 kb on + strand, within CA265_RS04140at 997.738 kb on - strand, within CA265_RS04140at 997.738 kb on - strand, within CA265_RS04140at 997.738 kb on - strand, within CA265_RS04140at 997.822 kb on + strandat 997.822 kb on + strandat 997.825 kb on - strandat 997.903 kb on + strandat 997.904 kb on - strandat 997.906 kb on - strandat 997.914 kb on - strandat 997.936 kb on + strandat 997.965 kb on + strandat 997.990 kb on - strandat 998.048 kb on - strandat 998.057 kb on + strandat 998.122 kb on - strand, within CA265_RS04145at 998.159 kb on - strand, within CA265_RS04145at 998.193 kb on + strand, within CA265_RS04145at 998.194 kb on - strand, within CA265_RS04145at 998.216 kb on + strand, within CA265_RS04145at 998.217 kb on - strand, within CA265_RS04145at 998.265 kb on + strand, within CA265_RS04145at 998.265 kb on + strand, within CA265_RS04145at 998.297 kb on - strand, within CA265_RS04145at 998.303 kb on + strand, within CA265_RS04145at 998.304 kb on - strand, within CA265_RS04145at 998.541 kb on + strand, within CA265_RS04145at 998.566 kb on + strand, within CA265_RS04145at 998.566 kb on + strand, within CA265_RS04145at 998.567 kb on - strand, within CA265_RS04145at 998.595 kb on + strand, within CA265_RS04145at 998.596 kb on - strand, within CA265_RS04145at 998.601 kb on - strand, within CA265_RS04145at 998.672 kb on + strand, within CA265_RS04145at 998.678 kb on - strand, within CA265_RS04145at 998.683 kb on + strand, within CA265_RS04145at 998.693 kb on - strand, within CA265_RS04145at 998.693 kb on - strand, within CA265_RS04145at 998.739 kb on - strand, within CA265_RS04145at 998.760 kb on + strand, within CA265_RS04145at 998.769 kb on + strand, within CA265_RS04145at 998.871 kb on + strand, within CA265_RS04145at 998.872 kb on - strand, within CA265_RS04145at 998.875 kb on - strand, within CA265_RS04145at 998.891 kb on + strand, within CA265_RS04145at 998.891 kb on + strand, within CA265_RS04145

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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995,560 - CA265_RS04135 0.16 -0.0
995,585 - CA265_RS04135 0.19 -0.1
995,587 + CA265_RS04135 0.20 -0.2
995,588 - CA265_RS04135 0.20 +0.1
995,686 - CA265_RS04135 0.32 +0.9
995,686 - CA265_RS04135 0.32 +1.3
995,761 + CA265_RS04135 0.42 +0.0
995,779 - CA265_RS04135 0.44 -0.1
995,779 - CA265_RS04135 0.44 +0.6
995,783 + CA265_RS04135 0.44 -0.7
995,798 + CA265_RS04135 0.46 -0.7
995,856 + CA265_RS04135 0.54 -0.0
995,926 + CA265_RS04135 0.62 -0.4
995,927 - CA265_RS04135 0.63 +0.4
995,928 + CA265_RS04135 0.63 -0.4
995,931 - CA265_RS04135 0.63 +0.4
995,965 + CA265_RS04135 0.67 +0.1
995,984 - CA265_RS04135 0.70 +0.1
996,035 - CA265_RS04135 0.76 +1.5
996,056 + CA265_RS04135 0.79 +0.6
996,158 - -0.2
996,166 + -0.2
996,303 - -0.4
996,333 + -0.8
996,333 + +2.0
996,340 - -0.2
996,340 - -1.3
996,346 + +0.0
996,358 - -0.1
996,367 + -0.5
996,411 - +0.3
996,411 - -0.1
996,413 - -0.4
996,413 - -1.2
996,415 - +0.2
996,420 - -0.3
996,534 + +0.2
996,534 + -0.3
996,534 + +0.5
996,536 + -0.1
996,584 + +0.5
996,618 - +0.3
996,664 - CA265_RS04140 0.10 +0.6
996,691 + CA265_RS04140 0.12 -1.5
996,692 - CA265_RS04140 0.12 +0.2
996,692 - CA265_RS04140 0.12 +0.0
996,692 - CA265_RS04140 0.12 -0.1
996,816 - CA265_RS04140 0.21 -1.1
996,823 + CA265_RS04140 0.21 +0.6
996,824 - CA265_RS04140 0.22 -0.0
996,835 - CA265_RS04140 0.22 +0.9
996,882 - CA265_RS04140 0.26 +1.1
996,936 - CA265_RS04140 0.29 +0.5
996,945 + CA265_RS04140 0.30 -1.2
996,968 - CA265_RS04140 0.32 -0.6
997,042 - CA265_RS04140 0.37 +0.3
997,052 - CA265_RS04140 0.38 +0.6
997,052 - CA265_RS04140 0.38 +0.6
997,052 - CA265_RS04140 0.38 +0.7
997,055 + CA265_RS04140 0.38 +1.0
997,111 - CA265_RS04140 0.42 -0.4
997,241 + CA265_RS04140 0.51 -0.9
997,242 - CA265_RS04140 0.51 +0.3
997,244 + CA265_RS04140 0.51 +1.1
997,311 - CA265_RS04140 0.56 +0.5
997,571 - CA265_RS04140 0.74 +0.0
997,572 + CA265_RS04140 0.74 -2.3
997,573 - CA265_RS04140 0.75 +0.3
997,573 - CA265_RS04140 0.75 +1.3
997,606 + CA265_RS04140 0.77 -1.0
997,606 + CA265_RS04140 0.77 +0.3
997,677 - CA265_RS04140 0.82 +0.7
997,696 - CA265_RS04140 0.83 +0.7
997,696 - CA265_RS04140 0.83 +0.4
997,726 - CA265_RS04140 0.85 +1.3
997,737 + CA265_RS04140 0.86 +0.2
997,737 + CA265_RS04140 0.86 -1.3
997,738 - CA265_RS04140 0.86 +0.8
997,738 - CA265_RS04140 0.86 +0.8
997,738 - CA265_RS04140 0.86 +1.3
997,822 + +0.0
997,822 + -0.7
997,825 - +0.8
997,903 + -0.2
997,904 - +0.5
997,906 - +0.9
997,914 - +0.8
997,936 + +1.4
997,965 + -0.3
997,990 - +0.4
998,048 - +0.4
998,057 + +2.0
998,122 - CA265_RS04145 0.14 +1.0
998,159 - CA265_RS04145 0.17 +0.0
998,193 + CA265_RS04145 0.20 +0.9
998,194 - CA265_RS04145 0.20 +0.7
998,216 + CA265_RS04145 0.22 -0.6
998,217 - CA265_RS04145 0.22 +0.0
998,265 + CA265_RS04145 0.25 +1.0
998,265 + CA265_RS04145 0.25 +0.1
998,297 - CA265_RS04145 0.28 +0.5
998,303 + CA265_RS04145 0.28 +0.7
998,304 - CA265_RS04145 0.29 +0.6
998,541 + CA265_RS04145 0.47 -0.7
998,566 + CA265_RS04145 0.49 -0.4
998,566 + CA265_RS04145 0.49 +1.1
998,567 - CA265_RS04145 0.49 +0.7
998,595 + CA265_RS04145 0.51 -0.3
998,596 - CA265_RS04145 0.52 +0.5
998,601 - CA265_RS04145 0.52 +0.4
998,672 + CA265_RS04145 0.58 +0.9
998,678 - CA265_RS04145 0.58 +0.8
998,683 + CA265_RS04145 0.58 +0.7
998,693 - CA265_RS04145 0.59 -1.0
998,693 - CA265_RS04145 0.59 +0.2
998,739 - CA265_RS04145 0.63 +0.8
998,760 + CA265_RS04145 0.64 +0.4
998,769 + CA265_RS04145 0.65 -0.4
998,871 + CA265_RS04145 0.73 -1.1
998,872 - CA265_RS04145 0.73 +0.3
998,875 - CA265_RS04145 0.74 -0.3
998,891 + CA265_RS04145 0.75 -1.1
998,891 + CA265_RS04145 0.75 +0.3

Or see this region's nucleotide sequence