Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02995 and CA265_RS03000 are separated by 201 nucleotides CA265_RS03000 and CA265_RS03005 are separated by 8 nucleotides CA265_RS03005 and CA265_RS03010 are separated by 108 nucleotides
CA265_RS02995: CA265_RS02995 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 745,939 to 746,760
_RS02995
CA265_RS03000: CA265_RS03000 - RNA-binding protein, at 746,962 to 747,363
_RS03000
CA265_RS03005: CA265_RS03005 - ABC transporter-associated protein EcsC, at 747,372 to 748,145
_RS03005
CA265_RS03010: CA265_RS03010 - hypothetical protein, at 748,254 to 750,179
_RS03010
Position (kb) 746
747
748 Strain fitness (log2 ratio) -2
-1
0
1 at 746.853 kb on + strand at 746.913 kb on + strand at 746.937 kb on - strand at 746.991 kb on + strand at 746.995 kb on + strand at 746.996 kb on - strand at 747.082 kb on - strand, within CA265_RS03000 at 747.084 kb on + strand, within CA265_RS03000 at 747.172 kb on + strand, within CA265_RS03000 at 747.173 kb on - strand, within CA265_RS03000 at 747.173 kb on - strand, within CA265_RS03000 at 747.174 kb on + strand, within CA265_RS03000 at 747.218 kb on + strand, within CA265_RS03000 at 747.343 kb on - strand at 747.361 kb on + strand at 747.370 kb on - strand at 747.417 kb on + strand at 747.418 kb on - strand at 747.424 kb on - strand at 747.437 kb on + strand at 747.483 kb on - strand, within CA265_RS03005 at 747.489 kb on + strand, within CA265_RS03005 at 747.495 kb on - strand, within CA265_RS03005 at 747.496 kb on + strand, within CA265_RS03005 at 747.566 kb on - strand, within CA265_RS03005 at 747.590 kb on + strand, within CA265_RS03005 at 747.591 kb on - strand, within CA265_RS03005 at 747.611 kb on + strand, within CA265_RS03005 at 747.611 kb on + strand, within CA265_RS03005 at 747.635 kb on + strand, within CA265_RS03005 at 747.636 kb on - strand, within CA265_RS03005 at 747.711 kb on + strand, within CA265_RS03005 at 747.711 kb on + strand, within CA265_RS03005 at 747.721 kb on - strand, within CA265_RS03005 at 747.755 kb on - strand, within CA265_RS03005 at 747.768 kb on - strand, within CA265_RS03005 at 747.900 kb on + strand, within CA265_RS03005 at 747.924 kb on + strand, within CA265_RS03005 at 747.999 kb on - strand, within CA265_RS03005 at 748.003 kb on - strand, within CA265_RS03005 at 748.029 kb on - strand, within CA265_RS03005 at 748.030 kb on + strand, within CA265_RS03005 at 748.031 kb on - strand, within CA265_RS03005 at 748.034 kb on + strand, within CA265_RS03005 at 748.035 kb on - strand, within CA265_RS03005 at 748.218 kb on + strand at 748.285 kb on + strand at 748.286 kb on - strand at 748.358 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 746,853 + -1.5 746,913 + +0.4 746,937 - -0.8 746,991 + -0.1 746,995 + -0.4 746,996 - -0.4 747,082 - CA265_RS03000 0.30 -0.1 747,084 + CA265_RS03000 0.30 +0.7 747,172 + CA265_RS03000 0.52 -0.1 747,173 - CA265_RS03000 0.52 +0.1 747,173 - CA265_RS03000 0.52 +1.4 747,174 + CA265_RS03000 0.53 -0.1 747,218 + CA265_RS03000 0.64 +0.9 747,343 - -0.1 747,361 + +0.3 747,370 - -0.1 747,417 + -0.4 747,418 - +0.1 747,424 - -0.1 747,437 + +1.2 747,483 - CA265_RS03005 0.14 +0.5 747,489 + CA265_RS03005 0.15 -0.4 747,495 - CA265_RS03005 0.16 -0.1 747,496 + CA265_RS03005 0.16 +1.2 747,566 - CA265_RS03005 0.25 -1.3 747,590 + CA265_RS03005 0.28 +0.2 747,591 - CA265_RS03005 0.28 -0.8 747,611 + CA265_RS03005 0.31 +0.5 747,611 + CA265_RS03005 0.31 +0.0 747,635 + CA265_RS03005 0.34 -0.4 747,636 - CA265_RS03005 0.34 -2.2 747,711 + CA265_RS03005 0.44 +0.7 747,711 + CA265_RS03005 0.44 -2.1 747,721 - CA265_RS03005 0.45 -0.1 747,755 - CA265_RS03005 0.49 -0.0 747,768 - CA265_RS03005 0.51 -0.8 747,900 + CA265_RS03005 0.68 +0.2 747,924 + CA265_RS03005 0.71 +0.3 747,999 - CA265_RS03005 0.81 +0.3 748,003 - CA265_RS03005 0.82 +0.5 748,029 - CA265_RS03005 0.85 +0.6 748,030 + CA265_RS03005 0.85 -0.2 748,031 - CA265_RS03005 0.85 -0.8 748,034 + CA265_RS03005 0.86 +1.4 748,035 - CA265_RS03005 0.86 +0.7 748,218 + +0.2 748,285 + -0.7 748,286 - -0.6 748,358 + -0.3
Or see this region's nucleotide sequence