Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01485

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01475 and CA265_RS01480 are separated by 69 nucleotidesCA265_RS01480 and CA265_RS01485 overlap by 16 nucleotidesCA265_RS01485 and CA265_RS01490 are separated by 808 nucleotides CA265_RS01475: CA265_RS01475 - DoxX family protein, at 373,909 to 374,355 _RS01475 CA265_RS01480: CA265_RS01480 - two-component system response regulator, at 374,425 to 375,249 _RS01480 CA265_RS01485: CA265_RS01485 - hypothetical protein, at 375,234 to 378,374 _RS01485 CA265_RS01490: CA265_RS01490 - SusC/RagA family TonB-linked outer membrane protein, at 379,183 to 382,323 _RS01490 Position (kb) 375 376 377 378 379Strain fitness (log2 ratio) -2 -1 0 1 2at 374.272 kb on - strand, within CA265_RS01475at 374.279 kb on - strand, within CA265_RS01475at 374.281 kb on + strand, within CA265_RS01475at 374.281 kb on + strand, within CA265_RS01475at 374.282 kb on - strand, within CA265_RS01475at 374.289 kb on + strand, within CA265_RS01475at 374.412 kb on + strandat 374.412 kb on + strandat 374.412 kb on + strandat 374.531 kb on - strand, within CA265_RS01480at 374.637 kb on + strand, within CA265_RS01480at 374.638 kb on - strand, within CA265_RS01480at 374.656 kb on + strand, within CA265_RS01480at 374.657 kb on - strand, within CA265_RS01480at 374.698 kb on + strand, within CA265_RS01480at 374.699 kb on - strand, within CA265_RS01480at 374.753 kb on - strand, within CA265_RS01480at 374.772 kb on + strand, within CA265_RS01480at 374.778 kb on - strand, within CA265_RS01480at 374.832 kb on + strand, within CA265_RS01480at 374.901 kb on - strand, within CA265_RS01480at 374.958 kb on + strand, within CA265_RS01480at 375.043 kb on + strand, within CA265_RS01480at 375.044 kb on - strand, within CA265_RS01480at 375.044 kb on - strand, within CA265_RS01480at 375.080 kb on - strand, within CA265_RS01480at 375.082 kb on + strand, within CA265_RS01480at 375.083 kb on - strand, within CA265_RS01480at 375.097 kb on + strand, within CA265_RS01480at 375.162 kb on + strand, within CA265_RS01480at 375.191 kb on - strandat 375.221 kb on - strandat 375.227 kb on + strandat 375.227 kb on + strandat 375.227 kb on + strandat 375.227 kb on + strandat 375.228 kb on - strandat 375.270 kb on + strandat 375.303 kb on + strandat 375.304 kb on - strandat 375.304 kb on - strandat 375.305 kb on + strandat 375.323 kb on + strandat 375.385 kb on - strandat 375.402 kb on + strandat 375.403 kb on - strandat 375.513 kb on + strandat 375.525 kb on - strandat 375.641 kb on + strand, within CA265_RS01485at 375.643 kb on + strand, within CA265_RS01485at 375.644 kb on - strand, within CA265_RS01485at 375.647 kb on + strand, within CA265_RS01485at 375.647 kb on + strand, within CA265_RS01485at 375.648 kb on - strand, within CA265_RS01485at 375.840 kb on + strand, within CA265_RS01485at 375.840 kb on + strand, within CA265_RS01485at 376.019 kb on - strand, within CA265_RS01485at 376.040 kb on + strand, within CA265_RS01485at 376.104 kb on + strand, within CA265_RS01485at 376.104 kb on + strand, within CA265_RS01485at 376.295 kb on - strand, within CA265_RS01485at 376.299 kb on + strand, within CA265_RS01485at 376.300 kb on - strand, within CA265_RS01485at 376.319 kb on + strand, within CA265_RS01485at 376.320 kb on - strand, within CA265_RS01485at 376.440 kb on + strand, within CA265_RS01485at 376.513 kb on + strand, within CA265_RS01485at 376.549 kb on + strand, within CA265_RS01485at 376.584 kb on - strand, within CA265_RS01485at 376.687 kb on + strand, within CA265_RS01485at 376.688 kb on - strand, within CA265_RS01485at 376.815 kb on + strand, within CA265_RS01485at 376.816 kb on - strand, within CA265_RS01485at 376.841 kb on + strand, within CA265_RS01485at 376.870 kb on + strand, within CA265_RS01485at 376.928 kb on + strand, within CA265_RS01485at 376.929 kb on - strand, within CA265_RS01485at 376.940 kb on + strand, within CA265_RS01485at 376.941 kb on - strand, within CA265_RS01485at 377.014 kb on + strand, within CA265_RS01485at 377.015 kb on - strand, within CA265_RS01485at 377.076 kb on - strand, within CA265_RS01485at 377.094 kb on + strand, within CA265_RS01485at 377.119 kb on + strand, within CA265_RS01485at 377.119 kb on + strand, within CA265_RS01485at 377.267 kb on + strand, within CA265_RS01485at 377.271 kb on + strand, within CA265_RS01485at 377.272 kb on - strand, within CA265_RS01485at 377.359 kb on - strand, within CA265_RS01485at 377.401 kb on + strand, within CA265_RS01485at 377.405 kb on + strand, within CA265_RS01485at 377.453 kb on - strand, within CA265_RS01485at 377.495 kb on + strand, within CA265_RS01485at 377.495 kb on + strand, within CA265_RS01485at 377.497 kb on + strand, within CA265_RS01485at 377.521 kb on + strand, within CA265_RS01485at 377.532 kb on - strand, within CA265_RS01485at 377.532 kb on - strand, within CA265_RS01485at 377.532 kb on - strand, within CA265_RS01485at 377.532 kb on - strand, within CA265_RS01485at 377.575 kb on + strand, within CA265_RS01485at 377.581 kb on + strand, within CA265_RS01485at 377.581 kb on + strand, within CA265_RS01485at 377.582 kb on - strand, within CA265_RS01485at 377.668 kb on - strand, within CA265_RS01485at 377.679 kb on - strand, within CA265_RS01485at 377.706 kb on - strand, within CA265_RS01485at 377.883 kb on + strand, within CA265_RS01485at 377.888 kb on + strand, within CA265_RS01485at 377.973 kb on + strand, within CA265_RS01485at 377.973 kb on + strand, within CA265_RS01485at 377.973 kb on + strand, within CA265_RS01485at 377.973 kb on + strand, within CA265_RS01485at 377.978 kb on - strand, within CA265_RS01485at 377.978 kb on - strand, within CA265_RS01485at 377.978 kb on - strand, within CA265_RS01485at 377.980 kb on - strand, within CA265_RS01485at 377.995 kb on - strand, within CA265_RS01485at 378.091 kb on + strandat 378.092 kb on - strandat 378.099 kb on + strandat 378.108 kb on - strandat 378.171 kb on + strandat 378.235 kb on - strandat 378.326 kb on - strandat 378.338 kb on - strandat 378.368 kb on + strandat 378.381 kb on + strandat 378.407 kb on + strandat 378.407 kb on + strandat 378.408 kb on - strandat 378.429 kb on + strandat 378.429 kb on + strandat 378.432 kb on - strandat 378.478 kb on + strandat 378.479 kb on - strandat 378.505 kb on + strandat 378.506 kb on - strandat 378.601 kb on - strandat 378.776 kb on - strandat 378.776 kb on - strandat 378.907 kb on + strandat 378.908 kb on - strandat 378.912 kb on + strandat 378.928 kb on + strandat 378.946 kb on - strandat 378.985 kb on - strandat 379.095 kb on + strandat 379.099 kb on + strandat 379.116 kb on + strandat 379.327 kb on - strandat 379.355 kb on + strandat 379.356 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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374,272 - CA265_RS01475 0.81 -0.5
374,279 - CA265_RS01475 0.83 -0.6
374,281 + CA265_RS01475 0.83 +0.1
374,281 + CA265_RS01475 0.83 -0.2
374,282 - CA265_RS01475 0.83 -1.1
374,289 + CA265_RS01475 0.85 +0.0
374,412 + -1.4
374,412 + +0.1
374,412 + -0.7
374,531 - CA265_RS01480 0.13 -0.0
374,637 + CA265_RS01480 0.26 +0.1
374,638 - CA265_RS01480 0.26 -0.5
374,656 + CA265_RS01480 0.28 +0.7
374,657 - CA265_RS01480 0.28 -1.0
374,698 + CA265_RS01480 0.33 -0.3
374,699 - CA265_RS01480 0.33 -0.0
374,753 - CA265_RS01480 0.40 -0.2
374,772 + CA265_RS01480 0.42 +0.2
374,778 - CA265_RS01480 0.43 +0.1
374,832 + CA265_RS01480 0.49 +0.7
374,901 - CA265_RS01480 0.58 +0.6
374,958 + CA265_RS01480 0.65 +0.2
375,043 + CA265_RS01480 0.75 -0.2
375,044 - CA265_RS01480 0.75 -0.5
375,044 - CA265_RS01480 0.75 +0.0
375,080 - CA265_RS01480 0.79 -0.0
375,082 + CA265_RS01480 0.80 -0.5
375,083 - CA265_RS01480 0.80 +0.1
375,097 + CA265_RS01480 0.81 -0.0
375,162 + CA265_RS01480 0.89 +0.8
375,191 - +0.3
375,221 - +0.0
375,227 + +0.0
375,227 + -2.0
375,227 + +0.0
375,227 + +0.0
375,228 - -0.6
375,270 + +0.0
375,303 + +1.1
375,304 - +1.0
375,304 - +0.6
375,305 + -0.3
375,323 + -0.3
375,385 - +0.6
375,402 + +0.3
375,403 - -0.3
375,513 + +0.1
375,525 - -0.3
375,641 + CA265_RS01485 0.13 -0.0
375,643 + CA265_RS01485 0.13 -0.0
375,644 - CA265_RS01485 0.13 +0.0
375,647 + CA265_RS01485 0.13 -0.2
375,647 + CA265_RS01485 0.13 +0.6
375,648 - CA265_RS01485 0.13 -0.7
375,840 + CA265_RS01485 0.19 +0.0
375,840 + CA265_RS01485 0.19 +0.4
376,019 - CA265_RS01485 0.25 -1.2
376,040 + CA265_RS01485 0.26 +0.6
376,104 + CA265_RS01485 0.28 -0.2
376,104 + CA265_RS01485 0.28 +0.1
376,295 - CA265_RS01485 0.34 -0.4
376,299 + CA265_RS01485 0.34 +0.1
376,300 - CA265_RS01485 0.34 +0.1
376,319 + CA265_RS01485 0.35 -1.0
376,320 - CA265_RS01485 0.35 -0.4
376,440 + CA265_RS01485 0.38 -0.8
376,513 + CA265_RS01485 0.41 -0.7
376,549 + CA265_RS01485 0.42 +0.0
376,584 - CA265_RS01485 0.43 -1.1
376,687 + CA265_RS01485 0.46 -0.1
376,688 - CA265_RS01485 0.46 +0.8
376,815 + CA265_RS01485 0.50 -0.0
376,816 - CA265_RS01485 0.50 -0.5
376,841 + CA265_RS01485 0.51 +0.4
376,870 + CA265_RS01485 0.52 -0.3
376,928 + CA265_RS01485 0.54 +0.2
376,929 - CA265_RS01485 0.54 +0.5
376,940 + CA265_RS01485 0.54 +0.5
376,941 - CA265_RS01485 0.54 -0.6
377,014 + CA265_RS01485 0.57 +0.2
377,015 - CA265_RS01485 0.57 +0.4
377,076 - CA265_RS01485 0.59 -1.6
377,094 + CA265_RS01485 0.59 +0.8
377,119 + CA265_RS01485 0.60 -0.4
377,119 + CA265_RS01485 0.60 +0.4
377,267 + CA265_RS01485 0.65 +0.5
377,271 + CA265_RS01485 0.65 +0.3
377,272 - CA265_RS01485 0.65 +0.0
377,359 - CA265_RS01485 0.68 +0.4
377,401 + CA265_RS01485 0.69 -0.6
377,405 + CA265_RS01485 0.69 +0.4
377,453 - CA265_RS01485 0.71 +1.8
377,495 + CA265_RS01485 0.72 -0.2
377,495 + CA265_RS01485 0.72 -0.1
377,497 + CA265_RS01485 0.72 -0.3
377,521 + CA265_RS01485 0.73 +0.0
377,532 - CA265_RS01485 0.73 +1.6
377,532 - CA265_RS01485 0.73 +0.1
377,532 - CA265_RS01485 0.73 -0.7
377,532 - CA265_RS01485 0.73 -0.9
377,575 + CA265_RS01485 0.75 +1.3
377,581 + CA265_RS01485 0.75 -0.1
377,581 + CA265_RS01485 0.75 -0.4
377,582 - CA265_RS01485 0.75 +0.5
377,668 - CA265_RS01485 0.77 +0.3
377,679 - CA265_RS01485 0.78 +0.3
377,706 - CA265_RS01485 0.79 +0.4
377,883 + CA265_RS01485 0.84 -0.9
377,888 + CA265_RS01485 0.84 +0.6
377,973 + CA265_RS01485 0.87 +0.1
377,973 + CA265_RS01485 0.87 +0.1
377,973 + CA265_RS01485 0.87 +0.4
377,973 + CA265_RS01485 0.87 -0.8
377,978 - CA265_RS01485 0.87 -0.0
377,978 - CA265_RS01485 0.87 -0.2
377,978 - CA265_RS01485 0.87 -2.3
377,980 - CA265_RS01485 0.87 -0.3
377,995 - CA265_RS01485 0.88 -0.0
378,091 + -1.2
378,092 - -0.5
378,099 + -0.4
378,108 - +0.7
378,171 + +0.8
378,235 - -1.1
378,326 - -0.3
378,338 - +1.3
378,368 + +0.2
378,381 + -0.2
378,407 + +0.6
378,407 + -0.1
378,408 - -0.7
378,429 + -0.0
378,429 + +2.0
378,432 - -1.0
378,478 + +0.2
378,479 - +0.0
378,505 + +0.1
378,506 - -0.0
378,601 - -0.3
378,776 - -1.3
378,776 - -0.2
378,907 + +0.1
378,908 - -0.2
378,912 + +0.5
378,928 + +0.3
378,946 - -0.5
378,985 - +2.0
379,095 + +0.2
379,099 + -0.1
379,116 + -0.2
379,327 - +0.0
379,355 + -0.9
379,356 - -0.1

Or see this region's nucleotide sequence