Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00465 and CA265_RS00470 are separated by 83 nucleotides CA265_RS00470 and CA265_RS00475 are separated by 29 nucleotides CA265_RS00475 and CA265_RS00480 are separated by 30 nucleotides CA265_RS00480 and CA265_RS00485 are separated by 82 nucleotides
CA265_RS00465: CA265_RS00465 - cupin, at 100,480 to 100,956
_RS00465
CA265_RS00470: CA265_RS00470 - hypothetical protein, at 101,040 to 101,687
_RS00470
CA265_RS00475: CA265_RS00475 - isoquinoline 1-oxidoreductase, at 101,717 to 103,978
_RS00475
CA265_RS00480: CA265_RS00480 - (2Fe-2S)-binding protein, at 104,009 to 104,470
_RS00480
CA265_RS00485: CA265_RS00485 - acyltransferase, at 104,553 to 105,668
_RS00485
Position (kb) 101
102
103
104 Strain fitness (log2 ratio) -2
-1
0
1 at 100.754 kb on + strand, within CA265_RS00465 at 100.755 kb on - strand, within CA265_RS00465 at 100.759 kb on + strand, within CA265_RS00465 at 100.789 kb on - strand, within CA265_RS00465 at 100.811 kb on + strand, within CA265_RS00465 at 100.987 kb on - strand at 101.018 kb on - strand at 101.045 kb on + strand at 101.055 kb on - strand at 101.057 kb on + strand at 101.058 kb on - strand at 101.122 kb on + strand, within CA265_RS00470 at 101.126 kb on + strand, within CA265_RS00470 at 101.126 kb on + strand, within CA265_RS00470 at 101.126 kb on + strand, within CA265_RS00470 at 101.126 kb on + strand, within CA265_RS00470 at 101.127 kb on - strand, within CA265_RS00470 at 101.127 kb on - strand, within CA265_RS00470 at 101.127 kb on - strand, within CA265_RS00470 at 101.127 kb on - strand, within CA265_RS00470 at 101.127 kb on - strand, within CA265_RS00470 at 101.127 kb on - strand, within CA265_RS00470 at 101.128 kb on + strand, within CA265_RS00470 at 101.213 kb on + strand, within CA265_RS00470 at 101.232 kb on + strand, within CA265_RS00470 at 101.232 kb on + strand, within CA265_RS00470 at 101.240 kb on - strand, within CA265_RS00470 at 101.346 kb on - strand, within CA265_RS00470 at 101.355 kb on + strand, within CA265_RS00470 at 101.388 kb on - strand, within CA265_RS00470 at 101.390 kb on + strand, within CA265_RS00470 at 101.525 kb on + strand, within CA265_RS00470 at 101.525 kb on + strand, within CA265_RS00470 at 101.525 kb on + strand, within CA265_RS00470 at 101.630 kb on + strand at 101.667 kb on + strand at 101.667 kb on + strand at 101.686 kb on - strand at 101.759 kb on - strand at 101.759 kb on - strand at 101.801 kb on - strand at 101.818 kb on - strand at 101.822 kb on - strand at 101.822 kb on - strand at 101.880 kb on - strand at 101.880 kb on - strand at 101.900 kb on - strand at 101.946 kb on + strand, within CA265_RS00475 at 101.999 kb on - strand, within CA265_RS00475 at 102.064 kb on + strand, within CA265_RS00475 at 102.080 kb on + strand, within CA265_RS00475 at 102.080 kb on + strand, within CA265_RS00475 at 102.122 kb on - strand, within CA265_RS00475 at 102.161 kb on - strand, within CA265_RS00475 at 102.161 kb on - strand, within CA265_RS00475 at 102.161 kb on - strand, within CA265_RS00475 at 102.220 kb on + strand, within CA265_RS00475 at 102.225 kb on - strand, within CA265_RS00475 at 102.254 kb on - strand, within CA265_RS00475 at 102.337 kb on + strand, within CA265_RS00475 at 102.353 kb on - strand, within CA265_RS00475 at 102.375 kb on - strand, within CA265_RS00475 at 102.479 kb on - strand, within CA265_RS00475 at 102.479 kb on - strand, within CA265_RS00475 at 102.496 kb on - strand, within CA265_RS00475 at 102.501 kb on + strand, within CA265_RS00475 at 102.572 kb on - strand, within CA265_RS00475 at 102.647 kb on - strand, within CA265_RS00475 at 102.649 kb on + strand, within CA265_RS00475 at 102.717 kb on - strand, within CA265_RS00475 at 102.743 kb on - strand, within CA265_RS00475 at 102.760 kb on - strand, within CA265_RS00475 at 102.817 kb on + strand, within CA265_RS00475 at 102.821 kb on + strand, within CA265_RS00475 at 102.821 kb on + strand, within CA265_RS00475 at 102.822 kb on - strand, within CA265_RS00475 at 102.822 kb on - strand, within CA265_RS00475 at 102.824 kb on - strand, within CA265_RS00475 at 102.955 kb on - strand, within CA265_RS00475 at 103.031 kb on + strand, within CA265_RS00475 at 103.075 kb on + strand, within CA265_RS00475 at 103.077 kb on + strand, within CA265_RS00475 at 103.108 kb on + strand, within CA265_RS00475 at 103.109 kb on - strand, within CA265_RS00475 at 103.113 kb on - strand, within CA265_RS00475 at 103.133 kb on + strand, within CA265_RS00475 at 103.135 kb on + strand, within CA265_RS00475 at 103.148 kb on - strand, within CA265_RS00475 at 103.192 kb on + strand, within CA265_RS00475 at 103.260 kb on - strand, within CA265_RS00475 at 103.288 kb on + strand, within CA265_RS00475 at 103.289 kb on - strand, within CA265_RS00475 at 103.295 kb on - strand, within CA265_RS00475 at 103.454 kb on + strand, within CA265_RS00475 at 103.470 kb on - strand, within CA265_RS00475 at 103.588 kb on - strand, within CA265_RS00475 at 103.592 kb on - strand, within CA265_RS00475 at 103.617 kb on - strand, within CA265_RS00475 at 103.630 kb on - strand, within CA265_RS00475 at 103.656 kb on + strand, within CA265_RS00475 at 103.756 kb on - strand at 103.774 kb on + strand at 103.778 kb on + strand at 103.882 kb on - strand at 103.909 kb on + strand at 103.909 kb on + strand at 103.910 kb on - strand at 103.988 kb on - strand at 103.988 kb on - strand at 104.009 kb on - strand at 104.019 kb on + strand at 104.041 kb on + strand at 104.147 kb on - strand, within CA265_RS00480 at 104.151 kb on + strand, within CA265_RS00480 at 104.152 kb on - strand, within CA265_RS00480 at 104.152 kb on - strand, within CA265_RS00480 at 104.152 kb on - strand, within CA265_RS00480 at 104.193 kb on + strand, within CA265_RS00480 at 104.193 kb on + strand, within CA265_RS00480 at 104.286 kb on + strand, within CA265_RS00480 at 104.375 kb on - strand, within CA265_RS00480 at 104.396 kb on - strand, within CA265_RS00480 at 104.414 kb on + strand, within CA265_RS00480 at 104.479 kb on + strand at 104.555 kb on - strand at 104.584 kb on - strand at 104.597 kb on - strand at 104.628 kb on - strand at 104.730 kb on + strand, within CA265_RS00485 at 104.751 kb on + strand, within CA265_RS00485 at 104.751 kb on + strand, within CA265_RS00485 at 104.752 kb on - strand, within CA265_RS00485 at 104.752 kb on - strand, within CA265_RS00485 at 104.792 kb on + strand, within CA265_RS00485 at 104.792 kb on + strand, within CA265_RS00485 at 104.792 kb on + strand, within CA265_RS00485 at 104.821 kb on - strand, within CA265_RS00485 at 104.908 kb on + strand, within CA265_RS00485 at 104.908 kb on + strand, within CA265_RS00485 at 104.909 kb on - strand, within CA265_RS00485 at 104.909 kb on - strand, within CA265_RS00485 at 104.910 kb on + strand at 104.910 kb on + strand, within CA265_RS00485 at 104.910 kb on + strand, within CA265_RS00485 at 104.911 kb on - strand, within CA265_RS00485 at 104.926 kb on - strand, within CA265_RS00485 at 104.941 kb on - strand, within CA265_RS00485 at 104.954 kb on + strand, within CA265_RS00485
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 100,754 + CA265_RS00465 0.57 +0.1 100,755 - CA265_RS00465 0.58 -0.1 100,759 + CA265_RS00465 0.58 +0.4 100,789 - CA265_RS00465 0.65 +0.5 100,811 + CA265_RS00465 0.69 +0.8 100,987 - +0.0 101,018 - +0.5 101,045 + +0.6 101,055 - +0.8 101,057 + -0.9 101,058 - +0.4 101,122 + CA265_RS00470 0.13 +0.2 101,126 + CA265_RS00470 0.13 -0.4 101,126 + CA265_RS00470 0.13 -0.7 101,126 + CA265_RS00470 0.13 -2.7 101,126 + CA265_RS00470 0.13 -1.2 101,127 - CA265_RS00470 0.13 +1.1 101,127 - CA265_RS00470 0.13 -0.2 101,127 - CA265_RS00470 0.13 -0.4 101,127 - CA265_RS00470 0.13 -0.2 101,127 - CA265_RS00470 0.13 +0.4 101,127 - CA265_RS00470 0.13 +0.1 101,128 + CA265_RS00470 0.14 -0.3 101,213 + CA265_RS00470 0.27 +0.4 101,232 + CA265_RS00470 0.30 -1.3 101,232 + CA265_RS00470 0.30 -1.2 101,240 - CA265_RS00470 0.31 -0.0 101,346 - CA265_RS00470 0.47 -0.0 101,355 + CA265_RS00470 0.49 -0.5 101,388 - CA265_RS00470 0.54 -0.1 101,390 + CA265_RS00470 0.54 -0.7 101,525 + CA265_RS00470 0.75 -1.8 101,525 + CA265_RS00470 0.75 +0.2 101,525 + CA265_RS00470 0.75 +0.1 101,630 + -1.6 101,667 + +0.5 101,667 + -0.2 101,686 - -1.3 101,759 - -1.5 101,759 - +0.8 101,801 - -0.7 101,818 - -0.4 101,822 - -0.9 101,822 - +0.2 101,880 - +0.0 101,880 - +0.6 101,900 - +0.9 101,946 + CA265_RS00475 0.10 +0.4 101,999 - CA265_RS00475 0.12 -0.1 102,064 + CA265_RS00475 0.15 -0.8 102,080 + CA265_RS00475 0.16 -0.2 102,080 + CA265_RS00475 0.16 +0.4 102,122 - CA265_RS00475 0.18 +0.2 102,161 - CA265_RS00475 0.20 -1.8 102,161 - CA265_RS00475 0.20 +1.1 102,161 - CA265_RS00475 0.20 -0.7 102,220 + CA265_RS00475 0.22 -0.2 102,225 - CA265_RS00475 0.22 +0.1 102,254 - CA265_RS00475 0.24 +0.8 102,337 + CA265_RS00475 0.27 +0.8 102,353 - CA265_RS00475 0.28 +0.5 102,375 - CA265_RS00475 0.29 +0.7 102,479 - CA265_RS00475 0.34 +0.7 102,479 - CA265_RS00475 0.34 +0.6 102,496 - CA265_RS00475 0.34 +0.7 102,501 + CA265_RS00475 0.35 +0.1 102,572 - CA265_RS00475 0.38 +0.4 102,647 - CA265_RS00475 0.41 +0.2 102,649 + CA265_RS00475 0.41 -2.5 102,717 - CA265_RS00475 0.44 +0.7 102,743 - CA265_RS00475 0.45 +0.3 102,760 - CA265_RS00475 0.46 +0.3 102,817 + CA265_RS00475 0.49 +0.0 102,821 + CA265_RS00475 0.49 -2.6 102,821 + CA265_RS00475 0.49 -1.3 102,822 - CA265_RS00475 0.49 +0.2 102,822 - CA265_RS00475 0.49 -0.7 102,824 - CA265_RS00475 0.49 +0.4 102,955 - CA265_RS00475 0.55 +0.0 103,031 + CA265_RS00475 0.58 +1.3 103,075 + CA265_RS00475 0.60 -0.5 103,077 + CA265_RS00475 0.60 +0.3 103,108 + CA265_RS00475 0.61 -1.2 103,109 - CA265_RS00475 0.62 -0.3 103,113 - CA265_RS00475 0.62 +0.3 103,133 + CA265_RS00475 0.63 -0.6 103,135 + CA265_RS00475 0.63 -1.0 103,148 - CA265_RS00475 0.63 +0.8 103,192 + CA265_RS00475 0.65 -1.5 103,260 - CA265_RS00475 0.68 +0.7 103,288 + CA265_RS00475 0.69 -1.0 103,289 - CA265_RS00475 0.69 +0.1 103,295 - CA265_RS00475 0.70 +0.5 103,454 + CA265_RS00475 0.77 -0.9 103,470 - CA265_RS00475 0.77 +0.5 103,588 - CA265_RS00475 0.83 +0.8 103,592 - CA265_RS00475 0.83 +1.2 103,617 - CA265_RS00475 0.84 +0.1 103,630 - CA265_RS00475 0.85 +0.1 103,656 + CA265_RS00475 0.86 -0.1 103,756 - -0.2 103,774 + -1.1 103,778 + -1.0 103,882 - -0.1 103,909 + -1.1 103,909 + +0.3 103,910 - -0.2 103,988 - +0.5 103,988 - -0.8 104,009 - +1.2 104,019 + +0.4 104,041 + -0.1 104,147 - CA265_RS00480 0.30 -0.6 104,151 + CA265_RS00480 0.31 -0.0 104,152 - CA265_RS00480 0.31 -1.8 104,152 - CA265_RS00480 0.31 +0.6 104,152 - CA265_RS00480 0.31 +0.1 104,193 + CA265_RS00480 0.40 -0.4 104,193 + CA265_RS00480 0.40 -0.8 104,286 + CA265_RS00480 0.60 -0.5 104,375 - CA265_RS00480 0.79 +0.1 104,396 - CA265_RS00480 0.84 +1.7 104,414 + CA265_RS00480 0.88 -0.3 104,479 + -0.7 104,555 - +0.2 104,584 - -0.7 104,597 - +0.2 104,628 - +0.2 104,730 + CA265_RS00485 0.16 -0.5 104,751 + CA265_RS00485 0.18 +0.7 104,751 + CA265_RS00485 0.18 -1.5 104,752 - CA265_RS00485 0.18 +0.4 104,752 - CA265_RS00485 0.18 -0.9 104,792 + CA265_RS00485 0.21 +0.1 104,792 + CA265_RS00485 0.21 -0.0 104,792 + CA265_RS00485 0.21 -0.5 104,821 - CA265_RS00485 0.24 +0.1 104,908 + CA265_RS00485 0.32 +0.0 104,908 + CA265_RS00485 0.32 -0.2 104,909 - CA265_RS00485 0.32 -0.7 104,909 - CA265_RS00485 0.32 -2.0 104,910 + +0.7 104,910 + CA265_RS00485 0.32 -1.3 104,910 + CA265_RS00485 0.32 +0.1 104,911 - CA265_RS00485 0.32 +1.0 104,926 - CA265_RS00485 0.33 -0.8 104,941 - CA265_RS00485 0.35 -0.6 104,954 + CA265_RS00485 0.36 -0.9
Or see this region's nucleotide sequence