Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35100

Experiment: LB, pH4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS35095 and BPHYT_RS35100 are separated by 122 nucleotidesBPHYT_RS35100 and BPHYT_RS35105 are separated by 31 nucleotides BPHYT_RS35095: BPHYT_RS35095 - LysR family transcriptional regulator, at 3,475,203 to 3,476,123 _RS35095 BPHYT_RS35100: BPHYT_RS35100 - ABC transporter substrate-binding protein, at 3,476,246 to 3,477,037 _RS35100 BPHYT_RS35105: BPHYT_RS35105 - succinylglutamate desuccinylase/aspartoacylase, at 3,477,069 to 3,478,184 _RS35105 Position (kb) 3476 3477 3478Strain fitness (log2 ratio) -2 -1 0 1at 3475.269 kb on - strandat 3475.334 kb on + strand, within BPHYT_RS35095at 3475.520 kb on + strand, within BPHYT_RS35095at 3476.203 kb on - strandat 3476.370 kb on - strand, within BPHYT_RS35100at 3476.702 kb on + strand, within BPHYT_RS35100at 3476.702 kb on + strand, within BPHYT_RS35100at 3477.153 kb on - strandat 3477.153 kb on - strandat 3477.856 kb on - strand, within BPHYT_RS35105at 3477.907 kb on + strand, within BPHYT_RS35105at 3477.910 kb on + strand, within BPHYT_RS35105

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH4
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3,475,269 - +0.2
3,475,334 + BPHYT_RS35095 0.14 +0.7
3,475,520 + BPHYT_RS35095 0.34 -0.5
3,476,203 - +0.3
3,476,370 - BPHYT_RS35100 0.16 -2.2
3,476,702 + BPHYT_RS35100 0.58 -0.7
3,476,702 + BPHYT_RS35100 0.58 -1.3
3,477,153 - -1.1
3,477,153 - -1.1
3,477,856 - BPHYT_RS35105 0.71 +0.1
3,477,907 + BPHYT_RS35105 0.75 -0.0
3,477,910 + BPHYT_RS35105 0.75 +0.6

Or see this region's nucleotide sequence