Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26915

Experiment: LB, pH4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26915 and BPHYT_RS26920 are separated by 227 nucleotides BPHYT_RS26915: BPHYT_RS26915 - Fis family transcriptional regulator, at 1,611,613 to 1,613,049 _RS26915 BPHYT_RS26920: BPHYT_RS26920 - major facilitator transporter, at 1,613,277 to 1,615,028 _RS26920 Position (kb) 1611 1612 1613 1614Strain fitness (log2 ratio) -1 0 1 2at 1610.696 kb on + strandat 1610.783 kb on - strandat 1610.783 kb on - strandat 1611.045 kb on - strandat 1611.089 kb on - strandat 1611.148 kb on + strandat 1611.149 kb on - strandat 1611.188 kb on - strandat 1611.199 kb on - strandat 1611.305 kb on + strandat 1611.383 kb on + strandat 1611.658 kb on + strandat 1611.659 kb on - strandat 1611.771 kb on + strand, within BPHYT_RS26915at 1611.915 kb on + strand, within BPHYT_RS26915at 1612.365 kb on + strand, within BPHYT_RS26915at 1612.621 kb on + strand, within BPHYT_RS26915at 1612.621 kb on + strand, within BPHYT_RS26915at 1612.622 kb on - strand, within BPHYT_RS26915at 1613.055 kb on + strandat 1613.055 kb on + strandat 1613.239 kb on + strandat 1613.239 kb on + strandat 1613.541 kb on + strand, within BPHYT_RS26920

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH4
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1,610,696 + +0.7
1,610,783 - +1.0
1,610,783 - +1.3
1,611,045 - +0.3
1,611,089 - +1.6
1,611,148 + -0.4
1,611,149 - +0.5
1,611,188 - +0.7
1,611,199 - +0.7
1,611,305 + +0.5
1,611,383 + +0.4
1,611,658 + +0.8
1,611,659 - +0.0
1,611,771 + BPHYT_RS26915 0.11 +2.6
1,611,915 + BPHYT_RS26915 0.21 -0.3
1,612,365 + BPHYT_RS26915 0.52 +0.7
1,612,621 + BPHYT_RS26915 0.70 +0.2
1,612,621 + BPHYT_RS26915 0.70 +0.9
1,612,622 - BPHYT_RS26915 0.70 +1.2
1,613,055 + +1.1
1,613,055 + +1.1
1,613,239 + +0.4
1,613,239 + +0.3
1,613,541 + BPHYT_RS26920 0.15 +0.7

Or see this region's nucleotide sequence