Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23440

Experiment: LB, pH4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23435 and BPHYT_RS23440 are separated by 33 nucleotidesBPHYT_RS23440 and BPHYT_RS23445 are separated by 108 nucleotides BPHYT_RS23435: BPHYT_RS23435 - MFS transporter, at 825,246 to 826,655 _RS23435 BPHYT_RS23440: BPHYT_RS23440 - alcohol dehydrogenase, at 826,689 to 827,735 _RS23440 BPHYT_RS23445: BPHYT_RS23445 - hexuronate transporter, at 827,844 to 829,136 _RS23445 Position (kb) 826 827 828Strain fitness (log2 ratio) -1 0 1at 825.889 kb on - strand, within BPHYT_RS23435at 826.047 kb on + strand, within BPHYT_RS23435at 826.816 kb on - strand, within BPHYT_RS23440at 826.819 kb on - strand, within BPHYT_RS23440at 827.046 kb on - strand, within BPHYT_RS23440at 827.586 kb on + strand, within BPHYT_RS23440at 827.587 kb on - strand, within BPHYT_RS23440at 827.587 kb on - strand, within BPHYT_RS23440at 827.905 kb on - strandat 828.564 kb on + strand, within BPHYT_RS23445at 828.564 kb on + strand, within BPHYT_RS23445

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH4
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825,889 - BPHYT_RS23435 0.46 +0.9
826,047 + BPHYT_RS23435 0.57 -0.1
826,816 - BPHYT_RS23440 0.12 -0.3
826,819 - BPHYT_RS23440 0.12 +0.7
827,046 - BPHYT_RS23440 0.34 +0.3
827,586 + BPHYT_RS23440 0.86 +0.8
827,587 - BPHYT_RS23440 0.86 +0.9
827,587 - BPHYT_RS23440 0.86 +0.2
827,905 - +0.2
828,564 + BPHYT_RS23445 0.56 -0.1
828,564 + BPHYT_RS23445 0.56 +0.6

Or see this region's nucleotide sequence