Experiment: LB, pH4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS14255 and BPHYT_RS14260 are separated by 110 nucleotides BPHYT_RS14260 and BPHYT_RS14265 are separated by 55 nucleotides
BPHYT_RS14255: BPHYT_RS14255 - ABC transporter, at 3,257,286 to 3,259,121
_RS14255
BPHYT_RS14260: BPHYT_RS14260 - trehalose-6-phosphate synthase, at 3,259,232 to 3,260,692
_RS14260
BPHYT_RS14265: BPHYT_RS14265 - trehalose-phosphatase, at 3,260,748 to 3,261,497
_RS14265
Position (kb) 3259
3260
3261 Strain fitness (log2 ratio) -1
0
1 at 3258.277 kb on + strand, within BPHYT_RS14255 at 3258.419 kb on + strand, within BPHYT_RS14255 at 3258.501 kb on + strand, within BPHYT_RS14255 at 3258.600 kb on - strand, within BPHYT_RS14255 at 3258.625 kb on - strand, within BPHYT_RS14255 at 3258.729 kb on + strand, within BPHYT_RS14255 at 3259.060 kb on - strand at 3259.233 kb on + strand at 3259.563 kb on + strand, within BPHYT_RS14260 at 3259.563 kb on + strand, within BPHYT_RS14260 at 3259.564 kb on - strand, within BPHYT_RS14260 at 3259.564 kb on - strand, within BPHYT_RS14260 at 3259.564 kb on - strand, within BPHYT_RS14260 at 3259.608 kb on + strand, within BPHYT_RS14260 at 3259.656 kb on + strand, within BPHYT_RS14260 at 3259.671 kb on + strand, within BPHYT_RS14260 at 3259.671 kb on + strand, within BPHYT_RS14260 at 3259.672 kb on - strand, within BPHYT_RS14260 at 3259.672 kb on - strand, within BPHYT_RS14260 at 3259.672 kb on - strand, within BPHYT_RS14260 at 3259.672 kb on - strand, within BPHYT_RS14260 at 3259.756 kb on - strand, within BPHYT_RS14260 at 3260.224 kb on + strand, within BPHYT_RS14260 at 3260.225 kb on - strand, within BPHYT_RS14260 at 3260.295 kb on + strand, within BPHYT_RS14260 at 3260.295 kb on + strand, within BPHYT_RS14260 at 3260.295 kb on + strand, within BPHYT_RS14260 at 3260.295 kb on + strand, within BPHYT_RS14260 at 3260.397 kb on + strand, within BPHYT_RS14260 at 3260.397 kb on + strand, within BPHYT_RS14260 at 3260.397 kb on + strand, within BPHYT_RS14260 at 3260.447 kb on - strand, within BPHYT_RS14260 at 3260.460 kb on + strand, within BPHYT_RS14260 at 3260.463 kb on + strand, within BPHYT_RS14260 at 3260.463 kb on + strand, within BPHYT_RS14260 at 3260.463 kb on + strand, within BPHYT_RS14260 at 3260.464 kb on - strand, within BPHYT_RS14260 at 3260.464 kb on - strand, within BPHYT_RS14260 at 3260.464 kb on - strand, within BPHYT_RS14260 at 3260.608 kb on - strand at 3260.714 kb on + strand at 3260.715 kb on - strand at 3260.819 kb on + strand at 3260.819 kb on + strand at 3261.192 kb on + strand, within BPHYT_RS14265 at 3261.578 kb on + strand at 3261.578 kb on + strand at 3261.579 kb on - strand at 3261.579 kb on - strand at 3261.579 kb on - strand at 3261.579 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH4 remove 3,258,277 + BPHYT_RS14255 0.54 -1.0 3,258,419 + BPHYT_RS14255 0.62 +0.1 3,258,501 + BPHYT_RS14255 0.66 -0.2 3,258,600 - BPHYT_RS14255 0.72 +0.3 3,258,625 - BPHYT_RS14255 0.73 +0.1 3,258,729 + BPHYT_RS14255 0.79 -0.1 3,259,060 - -0.3 3,259,233 + +0.4 3,259,563 + BPHYT_RS14260 0.23 +0.1 3,259,563 + BPHYT_RS14260 0.23 +0.2 3,259,564 - BPHYT_RS14260 0.23 +0.6 3,259,564 - BPHYT_RS14260 0.23 +0.6 3,259,564 - BPHYT_RS14260 0.23 +1.0 3,259,608 + BPHYT_RS14260 0.26 +0.2 3,259,656 + BPHYT_RS14260 0.29 +1.0 3,259,671 + BPHYT_RS14260 0.30 +0.6 3,259,671 + BPHYT_RS14260 0.30 +0.3 3,259,672 - BPHYT_RS14260 0.30 -0.2 3,259,672 - BPHYT_RS14260 0.30 +0.3 3,259,672 - BPHYT_RS14260 0.30 +0.9 3,259,672 - BPHYT_RS14260 0.30 +0.2 3,259,756 - BPHYT_RS14260 0.36 +0.7 3,260,224 + BPHYT_RS14260 0.68 +0.3 3,260,225 - BPHYT_RS14260 0.68 +0.7 3,260,295 + BPHYT_RS14260 0.73 +0.0 3,260,295 + BPHYT_RS14260 0.73 +0.4 3,260,295 + BPHYT_RS14260 0.73 +0.1 3,260,295 + BPHYT_RS14260 0.73 +0.5 3,260,397 + BPHYT_RS14260 0.80 -0.1 3,260,397 + BPHYT_RS14260 0.80 +0.7 3,260,397 + BPHYT_RS14260 0.80 +0.6 3,260,447 - BPHYT_RS14260 0.83 +0.4 3,260,460 + BPHYT_RS14260 0.84 +0.5 3,260,463 + BPHYT_RS14260 0.84 -0.6 3,260,463 + BPHYT_RS14260 0.84 +0.1 3,260,463 + BPHYT_RS14260 0.84 +0.5 3,260,464 - BPHYT_RS14260 0.84 +0.4 3,260,464 - BPHYT_RS14260 0.84 +0.4 3,260,464 - BPHYT_RS14260 0.84 +0.7 3,260,608 - -0.0 3,260,714 + +0.4 3,260,715 - +0.5 3,260,819 + +0.3 3,260,819 + -0.9 3,261,192 + BPHYT_RS14265 0.59 +0.6 3,261,578 + -0.2 3,261,578 + +0.7 3,261,579 - +0.3 3,261,579 - -0.7 3,261,579 - -0.0 3,261,579 - +0.5
Or see this region's nucleotide sequence