Experiment: LB, pH4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS13765 and BPHYT_RS13770 are separated by 155 nucleotides BPHYT_RS13770 and BPHYT_RS13775 are separated by 2 nucleotides
BPHYT_RS13765: BPHYT_RS13765 - LysR family transcriptional regulator, at 3,136,284 to 3,137,222
_RS13765
BPHYT_RS13770: BPHYT_RS13770 - RND transporter, at 3,137,378 to 3,139,192
_RS13770
BPHYT_RS13775: BPHYT_RS13775 - fusaric acid resistance protein, at 3,139,195 to 3,141,414
_RS13775
Position (kb)
3137
3138
3139
3140 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 3136.435 kb on + strand, within BPHYT_RS13765 at 3136.870 kb on + strand, within BPHYT_RS13765 at 3136.870 kb on + strand, within BPHYT_RS13765 at 3136.907 kb on - strand, within BPHYT_RS13765 at 3136.907 kb on - strand, within BPHYT_RS13765 at 3136.907 kb on - strand, within BPHYT_RS13765 at 3137.142 kb on - strand at 3137.222 kb on + strand at 3137.223 kb on - strand at 3137.223 kb on - strand at 3137.223 kb on - strand at 3137.356 kb on - strand at 3137.430 kb on + strand at 3137.431 kb on - strand at 3137.573 kb on + strand, within BPHYT_RS13770 at 3137.753 kb on + strand, within BPHYT_RS13770 at 3137.753 kb on + strand, within BPHYT_RS13770 at 3137.754 kb on - strand, within BPHYT_RS13770 at 3137.820 kb on - strand, within BPHYT_RS13770 at 3137.943 kb on - strand, within BPHYT_RS13770 at 3137.943 kb on - strand, within BPHYT_RS13770 at 3138.534 kb on - strand, within BPHYT_RS13770 at 3138.535 kb on + strand, within BPHYT_RS13770 at 3138.536 kb on - strand, within BPHYT_RS13770 at 3138.536 kb on - strand, within BPHYT_RS13770 at 3138.650 kb on + strand, within BPHYT_RS13770 at 3138.693 kb on - strand, within BPHYT_RS13770 at 3139.177 kb on + strand at 3139.304 kb on - strand at 3139.304 kb on - strand at 3139.305 kb on - strand at 3139.475 kb on + strand, within BPHYT_RS13775 at 3139.475 kb on + strand, within BPHYT_RS13775 at 3139.476 kb on - strand, within BPHYT_RS13775 at 3139.476 kb on - strand, within BPHYT_RS13775 at 3139.557 kb on + strand, within BPHYT_RS13775 at 3139.595 kb on - strand, within BPHYT_RS13775 at 3139.615 kb on + strand, within BPHYT_RS13775 at 3139.617 kb on + strand, within BPHYT_RS13775 at 3139.618 kb on - strand, within BPHYT_RS13775 at 3139.807 kb on + strand, within BPHYT_RS13775 at 3139.808 kb on - strand, within BPHYT_RS13775 at 3139.808 kb on - strand, within BPHYT_RS13775 at 3140.173 kb on + strand, within BPHYT_RS13775 at 3140.174 kb on - strand, within BPHYT_RS13775 at 3140.174 kb on - strand, within BPHYT_RS13775
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH4 remove 3,136,435 + BPHYT_RS13765 0.16 -0.7 3,136,870 + BPHYT_RS13765 0.62 +0.3 3,136,870 + BPHYT_RS13765 0.62 -1.1 3,136,907 - BPHYT_RS13765 0.66 -0.3 3,136,907 - BPHYT_RS13765 0.66 -1.0 3,136,907 - BPHYT_RS13765 0.66 -1.1 3,137,142 - +1.6 3,137,222 + -0.6 3,137,223 - -0.6 3,137,223 - +0.0 3,137,223 - +0.6 3,137,356 - +0.6 3,137,430 + -1.8 3,137,431 - -5.6 3,137,573 + BPHYT_RS13770 0.11 -3.6 3,137,753 + BPHYT_RS13770 0.21 -3.6 3,137,753 + BPHYT_RS13770 0.21 -4.9 3,137,754 - BPHYT_RS13770 0.21 -5.5 3,137,820 - BPHYT_RS13770 0.24 -5.8 3,137,943 - BPHYT_RS13770 0.31 -6.1 3,137,943 - BPHYT_RS13770 0.31 -4.8 3,138,534 - BPHYT_RS13770 0.64 -5.9 3,138,535 + BPHYT_RS13770 0.64 -4.3 3,138,536 - BPHYT_RS13770 0.64 -6.9 3,138,536 - BPHYT_RS13770 0.64 -5.5 3,138,650 + BPHYT_RS13770 0.70 -4.2 3,138,693 - BPHYT_RS13770 0.72 -6.3 3,139,177 + -2.6 3,139,304 - -3.9 3,139,304 - -4.6 3,139,305 - -2.3 3,139,475 + BPHYT_RS13775 0.13 -1.8 3,139,475 + BPHYT_RS13775 0.13 -3.2 3,139,476 - BPHYT_RS13775 0.13 -4.0 3,139,476 - BPHYT_RS13775 0.13 -3.6 3,139,557 + BPHYT_RS13775 0.16 -4.0 3,139,595 - BPHYT_RS13775 0.18 -5.9 3,139,615 + BPHYT_RS13775 0.19 -2.6 3,139,617 + BPHYT_RS13775 0.19 -5.6 3,139,618 - BPHYT_RS13775 0.19 -3.5 3,139,807 + BPHYT_RS13775 0.28 -4.9 3,139,808 - BPHYT_RS13775 0.28 -2.2 3,139,808 - BPHYT_RS13775 0.28 -2.8 3,140,173 + BPHYT_RS13775 0.44 -3.5 3,140,174 - BPHYT_RS13775 0.44 -5.6 3,140,174 - BPHYT_RS13775 0.44 -1.6
Or see this region's nucleotide sequence