Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12580

Experiment: LB, pH4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS12575 and BPHYT_RS12580 are separated by 21 nucleotidesBPHYT_RS12580 and BPHYT_RS12585 are separated by 86 nucleotides BPHYT_RS12575: BPHYT_RS12575 - histidine--tRNA ligase, at 2,870,266 to 2,871,606 _RS12575 BPHYT_RS12580: BPHYT_RS12580 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 2,871,628 to 2,872,944 _RS12580 BPHYT_RS12585: BPHYT_RS12585 - XRE family transcriptional regulator, at 2,873,031 to 2,874,119 _RS12585 Position (kb) 2871 2872 2873Strain fitness (log2 ratio) -1 0 1at 2871.611 kb on - strandat 2871.626 kb on - strandat 2872.947 kb on - strandat 2873.026 kb on - strandat 2873.075 kb on - strandat 2873.244 kb on - strand, within BPHYT_RS12585

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH4
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2,871,611 - +0.3
2,871,626 - -0.1
2,872,947 - +0.7
2,873,026 - -0.4
2,873,075 - +0.4
2,873,244 - BPHYT_RS12585 0.20 +0.8

Or see this region's nucleotide sequence