Experiment: LB, pH4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06615 and BPHYT_RS06620 are separated by 113 nucleotides BPHYT_RS06620 and BPHYT_RS06625 are separated by 162 nucleotides BPHYT_RS06625 and BPHYT_RS06630 are separated by 63 nucleotides BPHYT_RS06630 and BPHYT_RS06635 are separated by 21 nucleotides BPHYT_RS06635 and BPHYT_RS06640 are separated by 9 nucleotides
BPHYT_RS06615: BPHYT_RS06615 - preprotein translocase subunit SecG, at 1,502,461 to 1,502,838
_RS06615
BPHYT_RS06620: BPHYT_RS06620 - tRNA-Leu, at 1,502,952 to 1,503,036
_RS06620
BPHYT_RS06625: BPHYT_RS06625 - NADH-quinone oxidoreductase subunit A, at 1,503,199 to 1,503,558
_RS06625
BPHYT_RS06630: BPHYT_RS06630 - NADH-quinone oxidoreductase subunit B, at 1,503,622 to 1,504,101
_RS06630
BPHYT_RS06635: BPHYT_RS06635 - NADH-quinone oxidoreductase subunit C, at 1,504,123 to 1,504,725
_RS06635
BPHYT_RS06640: BPHYT_RS06640 - NADH-quinone oxidoreductase subunit D, at 1,504,735 to 1,505,988
_RS06640
Position (kb) 1503
1504
1505 Strain fitness (log2 ratio) -1
0
1 at 1503.043 kb on + strand at 1503.047 kb on + strand at 1503.047 kb on + strand at 1503.156 kb on + strand at 1503.156 kb on + strand at 1503.156 kb on + strand at 1504.099 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH4 remove 1,503,043 + +0.1 1,503,047 + +0.3 1,503,047 + +0.2 1,503,156 + -0.6 1,503,156 + -0.7 1,503,156 + -0.2 1,504,099 + -1.7
Or see this region's nucleotide sequence