Experiment: LB, pH4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04485 and BPHYT_RS04490 are separated by 111 nucleotides BPHYT_RS04490 and BPHYT_RS04495 are separated by 4 nucleotides BPHYT_RS04495 and BPHYT_RS04500 are separated by 11 nucleotides
BPHYT_RS04485: BPHYT_RS04485 - 3-deoxy-D-manno-octulosonic acid transferase, at 1,037,539 to 1,038,855
_RS04485
BPHYT_RS04490: BPHYT_RS04490 - hypothetical protein, at 1,038,967 to 1,039,677
_RS04490
BPHYT_RS04495: BPHYT_RS04495 - urease accessory protein UreG, at 1,039,682 to 1,040,335
_RS04495
BPHYT_RS04500: BPHYT_RS04500 - urease accessory protein UreF, at 1,040,347 to 1,041,027
_RS04500
Position (kb) 1038
1039
1040 Strain fitness (log2 ratio) -1
0
1
2
3 at 1038.908 kb on + strand at 1039.017 kb on - strand at 1039.154 kb on + strand, within BPHYT_RS04490 at 1039.154 kb on + strand, within BPHYT_RS04490 at 1039.154 kb on + strand, within BPHYT_RS04490 at 1039.155 kb on - strand, within BPHYT_RS04490 at 1039.339 kb on - strand, within BPHYT_RS04490 at 1039.348 kb on + strand, within BPHYT_RS04490 at 1039.509 kb on + strand, within BPHYT_RS04490 at 1039.891 kb on + strand, within BPHYT_RS04495 at 1039.930 kb on - strand, within BPHYT_RS04495 at 1039.930 kb on - strand, within BPHYT_RS04495 at 1040.166 kb on + strand, within BPHYT_RS04495 at 1040.166 kb on + strand, within BPHYT_RS04495 at 1040.166 kb on + strand, within BPHYT_RS04495 at 1040.167 kb on - strand, within BPHYT_RS04495 at 1040.196 kb on + strand, within BPHYT_RS04495 at 1040.197 kb on - strand, within BPHYT_RS04495 at 1040.197 kb on - strand, within BPHYT_RS04495 at 1040.348 kb on + strand at 1040.369 kb on + strand at 1040.609 kb on + strand, within BPHYT_RS04500
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH4 remove 1,038,908 + +0.2 1,039,017 - +0.5 1,039,154 + BPHYT_RS04490 0.26 +1.2 1,039,154 + BPHYT_RS04490 0.26 +1.4 1,039,154 + BPHYT_RS04490 0.26 +3.6 1,039,155 - BPHYT_RS04490 0.26 +0.1 1,039,339 - BPHYT_RS04490 0.52 +1.0 1,039,348 + BPHYT_RS04490 0.54 +0.3 1,039,509 + BPHYT_RS04490 0.76 -0.6 1,039,891 + BPHYT_RS04495 0.32 -0.7 1,039,930 - BPHYT_RS04495 0.38 -0.3 1,039,930 - BPHYT_RS04495 0.38 +0.6 1,040,166 + BPHYT_RS04495 0.74 +0.6 1,040,166 + BPHYT_RS04495 0.74 +0.1 1,040,166 + BPHYT_RS04495 0.74 +0.1 1,040,167 - BPHYT_RS04495 0.74 +0.8 1,040,196 + BPHYT_RS04495 0.79 -0.1 1,040,197 - BPHYT_RS04495 0.79 -0.2 1,040,197 - BPHYT_RS04495 0.79 -0.1 1,040,348 + -0.9 1,040,369 + +0.1 1,040,609 + BPHYT_RS04500 0.38 -0.8
Or see this region's nucleotide sequence